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2018


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Impact of the AIF Recording Method on Kinetic Parameters in Small Animal PET

Napieczynska, H., Kolb, A., Katiyar, P., Tonietto, M., Ud-Dean, M., Stumm, R., Herfert, K., Calaminus, C., Pichler, B.

Journal of Nuclear Medicine, 2018 (article)

DOI [BibTex]

2018

DOI [BibTex]


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Learning Causality and Causality-Related Learning: Some Recent Progress

Zhang, K., Schölkopf, B., Spirtes, P., Glymour, C.

National Science Review, 5(1):26-29, 2018 (article)

DOI [BibTex]

DOI [BibTex]


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Online optimal trajectory generation for robot table tennis

Koc, O., Maeda, G., Peters, J.

Robotics and Autonomous Systems, 105, pages: 121-137, 2018 (article)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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groupICA: Independent component analysis for grouped data

Pfister*, N., Weichwald*, S., Bülmann, P., Schölkopf, B.

2018, *equal contribution (article) Submitted

ArXiv Code Project page PDF [BibTex]


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Autofocusing-based phase correction

Loktyushin, A., Ehses, P., Schölkopf, B., Scheffler, K.

Magnetic Resonance in Medicine, 2018, Epub ahead (article)

DOI [BibTex]

DOI [BibTex]


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PET/MRI Hybrid Systems

Mannheim, G. J., Schmid, A. M., Schwenck, J., Katiyar, P., Herfert, K., Pichler, B. J., Disselhorst, J. A.

Seminars in Nuclear Medicine, 2018 (article) In press

DOI [BibTex]

DOI [BibTex]


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Prediction of Glucose Tolerance without an Oral Glucose Tolerance Test

Babbar, R., Heni, M., Peter, A., Hrabě de Angelis, M., Häring, H., Fritsche, A., Preissl, H., Schölkopf, B., Wagner, R.

Frontiers in Endocrinology, 9, pages: 82, 2018 (article)

DOI [BibTex]

DOI [BibTex]


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Invariant Models for Causal Transfer Learning

Rojas-Carulla, M., Schölkopf, B., Turner, R., Peters, J.

Journal of Machine Learning Research, 2018 (article) Accepted

[BibTex]

[BibTex]


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Discriminative Transfer Learning for General Image Restoration

Xiao, L., Heide, F., Heidrich, W., Schölkopf, B., Hirsch, M.

IEEE Transactions on Image Processing, 27(8):4091-4104, 2018 (article)

DOI [BibTex]

DOI [BibTex]


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Control of Musculoskeletal Systems using Learned Dynamics Models

Büchler, D., Calandra, R., Schölkopf, B., Peters, J.

IEEE Robotics and Automation Letters, Robotics and Automation Letters, IEEE, 2018 (article)

Abstract
Controlling musculoskeletal systems, especially robots actuated by pneumatic artificial muscles, is a challenging task due to nonlinearities, hysteresis effects, massive actuator de- lay and unobservable dependencies such as temperature. Despite such difficulties, muscular systems offer many beneficial prop- erties to achieve human-comparable performance in uncertain and fast-changing tasks. For example, muscles are backdrivable and provide variable stiffness while offering high forces to reach high accelerations. In addition, the embodied intelligence deriving from the compliance might reduce the control demands for specific tasks. In this paper, we address the problem of how to accurately control musculoskeletal robots. To address this issue, we propose to learn probabilistic forward dynamics models using Gaussian processes and, subsequently, to employ these models for control. However, Gaussian processes dynamics models cannot be set-up for our musculoskeletal robot as for traditional motor- driven robots because of unclear state composition etc. We hence empirically study and discuss in detail how to tune these approaches to complex musculoskeletal robots and their specific challenges. Moreover, we show that our model can be used to accurately control an antagonistic pair of pneumatic artificial muscles for a trajectory tracking task while considering only one- step-ahead predictions of the forward model and incorporating model uncertainty.

RAL18final link (url) DOI [BibTex]

RAL18final link (url) DOI [BibTex]

2017


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Ecological feedback in quorum-sensing microbial populations can induce heterogeneous production of autoinducers

Bauer*, M., Knebel*, J., Lechner, M., Pickl, P., Frey, E.

{eLife}, July 2017, *equal contribution (article)

DOI [BibTex]

2017

DOI [BibTex]


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Model-based Contextual Policy Search for Data-Efficient Generalization of Robot Skills

Kupcsik, A., Deisenroth, M., Peters, J., Ai Poh, L., Vadakkepat, V., Neumann, G.

Artificial Intelligence, 247, pages: 415-439, 2017, Special Issue on AI and Robotics (article)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Anticipatory Action Selection for Human-Robot Table Tennis

Wang, Z., Boularias, A., Mülling, K., Schölkopf, B., Peters, J.

Artificial Intelligence, 247, pages: 399-414, 2017, Special Issue on AI and Robotics (article)

Abstract
Abstract Anticipation can enhance the capability of a robot in its interaction with humans, where the robot predicts the humans' intention for selecting its own action. We present a novel framework of anticipatory action selection for human-robot interaction, which is capable to handle nonlinear and stochastic human behaviors such as table tennis strokes and allows the robot to choose the optimal action based on prediction of the human partner's intention with uncertainty. The presented framework is generic and can be used in many human-robot interaction scenarios, for example, in navigation and human-robot co-manipulation. In this article, we conduct a case study on human-robot table tennis. Due to the limited amount of time for executing hitting movements, a robot usually needs to initiate its hitting movement before the opponent hits the ball, which requires the robot to be anticipatory based on visual observation of the opponent's movement. Previous work on Intention-Driven Dynamics Models (IDDM) allowed the robot to predict the intended target of the opponent. In this article, we address the problem of action selection and optimal timing for initiating a chosen action by formulating the anticipatory action selection as a Partially Observable Markov Decision Process (POMDP), where the transition and observation are modeled by the \{IDDM\} framework. We present two approaches to anticipatory action selection based on the \{POMDP\} formulation, i.e., a model-free policy learning method based on Least-Squares Policy Iteration (LSPI) that employs the \{IDDM\} for belief updates, and a model-based Monte-Carlo Planning (MCP) method, which benefits from the transition and observation model by the IDDM. Experimental results using real data in a simulated environment show the importance of anticipatory action selection, and that \{POMDPs\} are suitable to formulate the anticipatory action selection problem by taking into account the uncertainties in prediction. We also show that existing algorithms for POMDPs, such as \{LSPI\} and MCP, can be applied to substantially improve the robot's performance in its interaction with humans.

DOI [BibTex]

DOI [BibTex]


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easyGWAS: A Cloud-based Platform for Comparing the Results of Genome-wide Association Studies

Grimm, D., Roqueiro, D., Salome, P., Kleeberger, S., Greshake, B., Zhu, W., Liu, C., Lippert, C., Stegle, O., Schölkopf, B., Weigel, D., Borgwardt, K.

The Plant Cell, 29(1):5-19, 2017 (article)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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A Novel Unsupervised Segmentation Approach Quantifies Tumor Tissue Populations Using Multiparametric MRI: First Results with Histological Validation

Katiyar, P., Divine, M. R., Kohlhofer, U., Quintanilla-Martinez, L., Schölkopf, B., Pichler, B. J., Disselhorst, J. A.

Molecular Imaging and Biology, 19(3):391-397, 2017 (article)

DOI [BibTex]

DOI [BibTex]


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Minimax Estimation of Kernel Mean Embeddings

Tolstikhin, I., Sriperumbudur, B., Muandet, K.

Journal of Machine Learning Research, 18(86):1-47, 2017 (article)

link (url) [BibTex]

link (url) [BibTex]


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Kernel Mean Embedding of Distributions: A Review and Beyond

Muandet, K., Fukumizu, K., Sriperumbudur, B., Schölkopf, B.

Foundations and Trends in Machine Learning, 10(1-2):1-141, 2017 (article)

DOI [BibTex]

DOI [BibTex]


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Case Series: Slowing Alpha Rhythm in Late-Stage ALS Patients

Hohmann, M. R., Fomina, T., Jayaram, V., Emde, T., Just, J., Synofzik, M., Schölkopf, B., Schöls, L., Grosse-Wentrup, M.

Clinical Neurophysiology, 129(2):406-408, 2017 (article)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Spectral Clustering predicts tumor tissue heterogeneity using dynamic 18F-FDG PET: a complement to the standard compartmental modeling approach

Katiyar, P., Divine, M. R., Kohlhofer, U., Quintanilla-Martinez, L., Schölkopf, B., Pichler, B. J., Disselhorst, J. A.

Journal of Nuclear Medicine, 58(4):651-657, 2017 (article)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Electroencephalographic identifiers of motor adaptation learning

Ozdenizci, O., Yalcin, M., Erdogan, A., Patoglu, V., Grosse-Wentrup, M., Cetin, M.

Journal of Neural Engineering, 14(4):046027, 2017 (article)

link (url) [BibTex]

link (url) [BibTex]


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Detecting distortions of peripherally presented letter stimuli under crowded conditions

Wallis, T. S. A., Tobias, S., Bethge, M., Wichmann, F. A.

Attention, Perception, & Psychophysics, 79(3):850-862, 2017 (article)

DOI [BibTex]

DOI [BibTex]


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BundleMAP: Anatomically Localized Classification, Regression, and Hypothesis Testing in Diffusion MRI

Khatami, M., Schmidt-Wilcke, T., Sundgren, P. C., Abbasloo, A., Schölkopf, B., Schultz, T.

Pattern Recognition, 63, pages: 593-600, 2017 (article)

DOI [BibTex]

DOI [BibTex]


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New Directions for Learning with Kernels and Gaussian Processes (Dagstuhl Seminar 16481)

Gretton, A., Hennig, P., Rasmussen, C., Schölkopf, B.

Dagstuhl Reports, 6(11):142-167, 2017 (article)

DOI [BibTex]

DOI [BibTex]


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A parametric texture model based on deep convolutional features closely matches texture appearance for humans

Wallis, T. S. A., Funke, C. M., Ecker, A. S., Gatys, L. A., Wichmann, F. A., Bethge, M.

Journal of Vision, 17(12), 2017 (article)

DOI [BibTex]

DOI [BibTex]


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Kernel-based tests for joint independence

Pfister, N., Bühlmann, P., Schölkopf, B., Peters, J.

Journal of the Royal Statistical Society: Series B (Statistical Methodology), 80(1):5-31, 2017 (article)

DOI [BibTex]

DOI [BibTex]


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An image-computable psychophysical spatial vision model

Schütt, H. H., Wichmann, F. A.

Journal of Vision, 17(12), 2017 (article)

DOI [BibTex]

DOI [BibTex]


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Model Selection for Gaussian Mixture Models

Huang, T., Peng, H., Zhang, K.

Statistica Sinica, 27(1):147-169, 2017 (article)

link (url) [BibTex]

link (url) [BibTex]


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On Maximum Entropy and Inference

Gresele, L., Marsili, M.

Entropy, 19(12):article no. 642, 2017 (article)

link (url) [BibTex]

link (url) [BibTex]


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Absence of EEG correlates of self-referential processing depth in ALS

Fomina, T., Weichwald, S., Synofzik, M., Just, J., Schöls, L., Schölkopf, B., Grosse-Wentrup, M.

PLOS ONE, 12(6):e0180136, 2017 (article)

PDF DOI [BibTex]

2016


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On estimation of functional causal models: General results and application to post-nonlinear causal model

Zhang, K., Wang, Z., Zhang, J., Schölkopf, B.

ACM Transactions on Intelligent Systems and Technologies, 7(2):article no. 13, January 2016 (article)

PDF DOI [BibTex]

2016

PDF DOI [BibTex]


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Pymanopt: A Python Toolbox for Optimization on Manifolds using Automatic Differentiation

Townsend, J., Koep, N., Weichwald, S.

Journal of Machine Learning Research, 17(137):1-5, 2016 (article)

PDF Arxiv Code Project page link (url) [BibTex]


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A Causal, Data-driven Approach to Modeling the Kepler Data

Wang, D., Hogg, D. W., Foreman-Mackey, D., Schölkopf, B.

Publications of the Astronomical Society of the Pacific, 128(967):094503, 2016 (article)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Probabilistic Inference for Determining Options in Reinforcement Learning

Daniel, C., van Hoof, H., Peters, J., Neumann, G.

Machine Learning, Special Issue, 104(2):337-357, (Editors: Gärtner, T., Nanni, M., Passerini, A. and Robardet, C.), European Conference on Machine Learning im Machine Learning, Journal Track, 2016, Best Student Paper Award of ECMLPKDD 2016 (article)

DOI [BibTex]

DOI [BibTex]


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Modeling Confounding by Half-Sibling Regression

Schölkopf, B., Hogg, D., Wang, D., Foreman-Mackey, D., Janzing, D., Simon-Gabriel, C. J., Peters, J.

Proceedings of the National Academy of Science, 113(27):7391-7398, 2016 (article)

Code link (url) DOI [BibTex]

Code link (url) DOI [BibTex]


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Influence of initial fixation position in scene viewing

Rothkegel, L. O. M., Trukenbrod, H. A., Schütt, H. H., Wichmann, F. A., Engbert, R.

Vision Research, 129, pages: 33-49, 2016 (article)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Testing models of peripheral encoding using metamerism in an oddity paradigm

Wallis, T. S. A., Bethge, M., Wichmann, F. A.

Journal of Vision, 16(2), 2016 (article)

DOI [BibTex]

DOI [BibTex]


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A Population Based Gaussian Mixture Model Incorporating 18F-FDG-PET and DW-MRI Quantifies Tumor Tissue Classes

Divine, M. R., Katiyar, P., Kohlhofer, U., Quintanilla-Martinez, L., Disselhorst, J. A., Pichler, B. J.

Journal of Nuclear Medicine, 57(3):473-479, 2016 (article)

DOI [BibTex]

DOI [BibTex]


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Painfree and accurate Bayesian estimation of psychometric functions for (potentially) overdispersed data

Schütt, H. H., Harmeling, S., Macke, J. H., Wichmann, F. A.

Vision Research, 122, pages: 105-123, 2016 (article)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Self-regulation of brain rhythms in the precuneus: a novel BCI paradigm for patients with ALS

Fomina, T., Lohmann, G., Erb, M., Ethofer, T., Schölkopf, B., Grosse-Wentrup, M.

Journal of Neural Engineering, 13(6):066021, 2016 (article)

link (url) [BibTex]

link (url) [BibTex]


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Learning to Deblur

Schuler, C. J., Hirsch, M., Harmeling, S., Schölkopf, B.

IEEE Transactions on Pattern Analysis and Machine Intelligence, 38(7):1439-1451, IEEE, 2016 (article)

DOI [BibTex]

DOI [BibTex]


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Transfer Learning in Brain-Computer Interfaces

Jayaram, V., Alamgir, M., Altun, Y., Schölkopf, B., Grosse-Wentrup, M.

IEEE Computational Intelligence Magazine, 11(1):20-31, 2016 (article)

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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MERLiN: Mixture Effect Recovery in Linear Networks

Weichwald, S., Grosse-Wentrup, M., Gretton, A.

IEEE Journal of Selected Topics in Signal Processing, 10(7):1254-1266, 2016 (article)

Arxiv Code PDF DOI [BibTex]

Arxiv Code PDF DOI [BibTex]