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Cheng Soon Ong
Position: Research Scientist

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2013
Conference Papers
  • F. Dinuzzo, CS. Ong, K. Fukumizu (2013). Output Kernel Learning Methods In: International Workshop on Advances in Regularization, Optimization, Kernel Methods and Support Vector Machines: theory and applications, ROKS 2013
2011
Conference Papers
  • F. Dinuzzo, CS. Ong, PV. Gehler, G. Pillonetto (2011). Learning output kernels with block coordinate descent (Ed) Getoor, L. , T. Scheffer, International Machine Learning Society, Madison, WI, USA, 49-56, ISBN: 978-1-450-30619-5, 28th International Conference on Machine Learning (ICML 2011)
2009
Articles
  • G. Schweikert, A. Zien, G. Zeller, J. Behr, C. Dieterich, CS. Ong, P. Philips, F. De Bona, L. Hartmann, A. Bohlen, N. Krüger, S. Sonnenburg, G. Rätsch (2009). mGene: accurate SVM-based gene finding with an application to nematode genomes Genome Research, 19, (11), 2133-43
2008
Articles
Talks
Conference Papers
  • CS. Ong, A. Zien (2008). An Automated Combination of Kernels for Predicting Protein Subcellular Localization In: WABI 2008, (Ed) Crandall, K. A., J. Lagergren, Algorithms in Bioinformatics: 8th International Workshop (WABI 2008), Springer, Berlin, Germany, 186-197, 8th Workshop on Algorithms in Bioinformatics
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2007
Talks
  • A. Zien, CS. Ong (2007). An Automated Combination of Kernels for Predicting Protein Subcellular Localization NIPS 2007 Workshop on Machine Learning in Computational Biology
Articles
  • U. Schulze, B. Hepp, CS. Ong, G. Rätsch (2007). PALMA: mRNA to Genome Alignments using Large Margin Algorithms Bioinformatics, 23, (15), 1892-1900
Conference Papers
  • A. Zien, CS. Ong (2007). Multiclass Multiple Kernel Learning In: ICML 2007, (Ed) Ghahramani, Z. , Proceedings of the 24th International Conference on Machine Learning (ICML 2007), ACM Press, New York, NY, USA, 1191-1198, 24th International Conference on Machine Learning
  • A. Zien, FD. Bona, CS. Ong (2007). Training and Approximation of a Primal Multiclass Support Vector Machine In: ASMDA 2007, (Ed) Skiadas, C. H., Proceedings of the 12th International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), Max Planck Institute for Biological Cybernetics, Tuebingen, Germany, 1-8, 12th International Conference on Applied Stochastic Models and Data Analysis
2006
Conference Papers
  • G. Rätsch, B. Hepp, U. Schulze, CS. Ong (2006). PALMA: Perfect Alignments using Large Margin Algorithms In: GCB 2006, (Ed) Huson, D. , O. Kohlbacher, A. Lupas, K. Nieselt, A. Zell, Proceedings of the German Conference on Bioinformatics 2006 (GCB 2006), Gesellschaft für Informatik, Bonn, Germany, 104-113, German Conference on Bioinformatics 2006
Technical Reports
  • A. Zien, CS. Ong (2006). An Automated Combination of Sequence Motif Kernels for Predicting Protein Subcellular Localization Max Planck Institute for Biological Cybernetics, Tübingen
  • A. Zien, G. Raetsch, CS. Ong (2006). Towards the Inference of Graphs on Ordered Vertexes Max Planck Institute for Biological Cybernetics, Tübingen
Talks
2005
Articles
  • KM. Borgwardt, CS. Ong, S. Schönauer, . Vishwanathan, AJ. Smola, H-P. Kriegel (2005). Protein function prediction via graph kernels Bioinformatics, 21, (Suppl. 1: ISMB 2005 Proceedings), i47-i56
  • CS. Ong, A. Smola, R. Williamson (2005). Learning the Kernel with Hyperkernels Journal of Machine Learning Research, 6, 1043-1071
Conference Papers
  • S. Canu, CS. Ong, X. Mary (2005). Splines with non positive kernels In: 5th International ISAAC Congress, (Ed) Begehr, H. G.W., F. Nicolosi, More Progresses in Analysis: Proceedings of the 5th International ISAAC Congress, World Scientific, International Society for Analysis, its Applications and Computation, Singapore, 1-10, 5th International ISAAC Congress
Theses
  • CS. Ong (2005). Kernels: Regularization and Optimization The Australian National University, Canberra, Australia, (Ph.D Thesis)
2004
Conference Papers
  • CS. Ong, X. Mary, S. Canu, AJ. Smola (2004). Learning with Non-Positive Kernels In: ICML 2004, Proceedings of the Twenty-First International Conference on Machine Learning (ICML 2004), ACM Press, New York, NY, USA, 81-81, Twenty-First International Conference on Machine Learning
2003
Conference Papers
2001
Conference Papers
  • FWMH. Wong, ASM. Supian, AF. Ismail, WK. Lai, CS. Ong (2001). Enhanced User Authentication through Typing Biometrics with Artificial Neural Networks and K-Nearest Neighbor Algorithm
2000
Articles
  • CS. Ong (2000). Knowledge Discovery in Databases: An Information Retrieval Perspective Malaysian Journal of Computer Science, 13, (2), 54-63
Conference Papers
  • CS. Ong, WK. Lai (2000). Enhanced Password Authentication Through Typing Biometrics with K-Means Clustering Algorithm
  • SY. Tai, CS. Ong, NA. Abullah (2000). On Designing an Automated Malaysian Stemmer for the Malay Language In: Fifth International Workshop on Information Retrieval with Asian Languages, Proceedings of the Fifth International Workshop on Information Retrieval with Asian Languages, ACM Press, New York, NY, USA, 207-208, Fifth International Workshop on Information Retrieval with Asian Languages
1999
Conference Papers
  • K. Maisuria, CS. Ong, . Lai (1999). A Comparison of Artificial Neural Networks and Cluster Analysis for Typing Biometrics Authentication unknown, 9999-9999, International Joint Conference on Neural Networks