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2004


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Protein Classification via Kernel Matrix Completion

Kin, T., Kato, T., Tsuda, K.

In pages: 261-274, (Editors: Schoelkopf, B., K. Tsuda and J.P. Vert), MIT Press, Cambridge, MA; USA, 2004 (inbook)

PDF [BibTex]

2004

PDF [BibTex]


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Behaviour and Convergence of the Constrained Covariance

Gretton, A., Smola, A., Bousquet, O., Herbrich, R., Schölkopf, B., Logothetis, N.

(130), MPI for Biological Cybernetics, 2004 (techreport)

Abstract
We discuss reproducing kernel Hilbert space (RKHS)-based measures of statistical dependence, with emphasis on constrained covariance (COCO), a novel criterion to test dependence of random variables. We show that COCO is a test for independence if and only if the associated RKHSs are universal. That said, no independence test exists that can distinguish dependent and independent random variables in all circumstances. Dependent random variables can result in a COCO which is arbitrarily close to zero when the source densities are highly non-smooth, which can make dependence hard to detect empirically. All current kernel-based independence tests share this behaviour. Finally, we demonstrate exponential convergence between the population and empirical COCO, which implies that COCO does not suffer from slow learning rates when used as a dependence test.

PDF [BibTex]

PDF [BibTex]


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Early visual processing—data, theory, models

Wichmann, F.

Experimentelle Psychologie. Beitr{\"a}ge zur 46. Tagung experimentell arbeitender Psychologen, 46, pages: 24, 2004 (poster)

[BibTex]

[BibTex]


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Statistical Learning with Similarity and Dissimilarity Functions

von Luxburg, U.

pages: 1-166, Technische Universität Berlin, Germany, Technische Universität Berlin, Germany, 2004 (phdthesis)

PDF PostScript [BibTex]

PDF PostScript [BibTex]


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Statistische Lerntheorie und Empirische Inferenz

Schölkopf, B.

Jahrbuch der Max-Planck-Gesellschaft, 2004, pages: 377-382, 2004 (misc)

Abstract
Statistical learning theory studies the process of inferring regularities from empirical data. The fundamental problem is what is called generalization: how it is possible to infer a law which will be valid for an infinite number of future observations, given only a finite amount of data? This problem hinges upon fundamental issues of statistics and science in general, such as the problems of complexity of explanations, a priori knowledge, and representation of data.

PDF Web [BibTex]

PDF Web [BibTex]


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Practical Method for Blind Inversion of Wiener Systems

Zhang, K., Chan, L.

In Proceedings of International Joint Conference on Neural Networks (IJCNN 2004), pages: 2163-2168, International Joint Conference on Neural Networks (IJCNN), 2004, Volume 3 (inproceedings)

DOI [BibTex]

DOI [BibTex]


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Bayesian analysis of the Scatterometer Wind Retrieval Inverse Problem: Some New Approaches

Cornford, D., Csato, L., Evans, D., Opper, M.

Journal of the Royal Statistical Society B, 66, pages: 1-17, 3, 2004 (article)

Abstract
The retrieval of wind vectors from satellite scatterometer observations is a non-linear inverse problem.A common approach to solving inverse problems is to adopt a Bayesian framework and to infer the posterior distribution of the parameters of interest given the observations by using a likelihood model relating the observations to the parameters, and a prior distribution over the parameters.We show how Gaussian process priors can be used efficiently with a variety of likelihood models, using local forward (observation) models and direct inverse models for the scatterometer.We present an enhanced Markov chain Monte Carlo method to sample from the resulting multimodal posterior distribution.We go on to show how the computational complexity of the inference can be controlled by using a sparse, sequential Bayes algorithm for estimation with Gaussian processes.This helps to overcome the most serious barrier to the use of probabilistic, Gaussian process methods in remote sensing inverse problems, which is the prohibitively large size of the data sets.We contrast the sampling results with the approximations that are found by using the sparse, sequential Bayes algorithm.

PDF [BibTex]

PDF [BibTex]


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Feature Selection for Support Vector Machines Using Genetic Algorithms

Fröhlich, H., Chapelle, O., Schölkopf, B.

International Journal on Artificial Intelligence Tools (Special Issue on Selected Papers from the 15th IEEE International Conference on Tools with Artificial Intelligence 2003), 13(4):791-800, 2004 (article)

Web [BibTex]

Web [BibTex]


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Semi-supervised kernel regression using whitened function classes

Franz, M., Kwon, Y., Rasmussen, C., Schölkopf, B.

In Pattern Recognition, Proceedings of the 26th DAGM Symposium, Lecture Notes in Computer Science, Vol. 3175, LNCS 3175, pages: 18-26, (Editors: CE Rasmussen and HH Bülthoff and MA Giese and B Schölkopf), Springer, Berlin, Gerrmany, 26th DAGM Symposium, 2004 (inproceedings)

Abstract
The use of non-orthonormal basis functions in ridge regression leads to an often undesired non-isotropic prior in function space. In this study, we investigate an alternative regularization technique that results in an implicit whitening of the basis functions by penalizing directions in function space with a large prior variance. The regularization term is computed from unlabelled input data that characterizes the input distribution. Tests on two datasets using polynomial basis functions showed an improved average performance compared to standard ridge regression.

PDF PostScript [BibTex]

PDF PostScript [BibTex]


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Maximal Margin Classification for Metric Spaces

Hein, M., Bousquet, O.

In Learning Theory and Kernel Machines, pages: 72-86, (Editors: Schölkopf, B. and Warmuth, M. K.), Springer, Heidelberg, Germany, 16. Annual Conference on Computational Learning Theory / COLT Kernel, 2004 (inproceedings)

Abstract
In this article we construct a maximal margin classification algorithm for arbitrary metric spaces. At first we show that the Support Vector Machine (SVM) is a maximal margin algorithm for the class of metric spaces where the negative squared distance is conditionally positive definite (CPD). This means that the metric space can be isometrically embedded into a Hilbert space, where one performs linear maximal margin separation. We will show that the solution only depends on the metric, but not on the kernel. Following the framework we develop for the SVM, we construct an algorithm for maximal margin classification in arbitrary metric spaces. The main difference compared with SVM is that we no longer embed isometrically into a Hilbert space, but a Banach space. We further give an estimate of the capacity of the function class involved in this algorithm via Rademacher averages. We recover an algorithm of Graepel et al. [6].

PDF PostScript PDF DOI [BibTex]

PDF PostScript PDF DOI [BibTex]


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On the Convergence of Spectral Clustering on Random Samples: The Normalized Case

von Luxburg, U., Bousquet, O., Belkin, M.

In Proceedings of the 17th Annual Conference on Learning Theory, pages: 457-471, Proceedings of the 17th Annual Conference on Learning Theory, 2004 (inproceedings)

PDF PostScript [BibTex]

PDF PostScript [BibTex]


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Introduction to Statistical Learning Theory

Bousquet, O., Boucheron, S., Lugosi, G.

In Lecture Notes in Artificial Intelligence 3176, pages: 169-207, (Editors: Bousquet, O., U. von Luxburg and G. Rätsch), Springer, Heidelberg, Germany, 2004 (inbook)

PDF [BibTex]

PDF [BibTex]


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A Primer on Kernel Methods

Vert, J., Tsuda, K., Schölkopf, B.

In Kernel Methods in Computational Biology, pages: 35-70, (Editors: B Schölkopf and K Tsuda and JP Vert), MIT Press, Cambridge, MA, USA, 2004 (inbook)

PDF [BibTex]

PDF [BibTex]


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Confidence Sets for Ratios: A Purely Geometric Approach To Fieller’s Theorem

von Luxburg, U., Franz, V.

(133), Max Planck Institute for Biological Cybernetics, 2004 (techreport)

Abstract
We present a simple, geometric method to construct Fieller's exact confidence sets for ratios of jointly normally distributed random variables. Contrary to previous geometric approaches in the literature, our method is valid in the general case where both sample mean and covariance are unknown. Moreover, not only the construction but also its proof are purely geometric and elementary, thus giving intuition into the nature of the confidence sets.

PDF [BibTex]

PDF [BibTex]


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Transductive Inference with Graphs

Zhou, D., Schölkopf, B.

Max Planck Institute for Biological Cybernetics, 2004, See the improved version Regularization on Discrete Spaces. (techreport)

Abstract
We propose a general regularization framework for transductive inference. The given data are thought of as a graph, where the edges encode the pairwise relationships among data. We develop discrete analysis and geometry on graphs, and then naturally adapt the classical regularization in the continuous case to the graph situation. A new and effective algorithm is derived from this general framework, as well as an approach we developed before.

[BibTex]

[BibTex]


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Classification and Feature Extraction in Man and Machine

Graf, AAB.

Biologische Kybernetik, University of Tübingen, Germany, 2004, online publication (phdthesis)

[BibTex]

[BibTex]


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Optical Imaging of the Spatiotemporal Dynamics of Cerebral Blood Flow and Oxidative Metabolism in the Rat Barrel Cortex

Weber, B., Burger, C., Wyss, M., von Schulthess, G., Scheffold, F., Buck, A.

European Journal of Neuroscience, 20(10):2664-2670, 2004 (article)

PDF [BibTex]

PDF [BibTex]


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Kompetenzerwerb für Informationssysteme - Einfluss des Lernprozesses auf die Interaktion mit Fahrerinformationssystemen. Veröffentlichter Abschlussbericht (Förderkennzeichen BaSt FE 82.196/2001).

Totzke, I., Krüger, H., Hofmann, M., Meilinger, T., Rauch, N., Schmidt, G.

Interdisziplinäres Zentrum für Verkehrswissenschaften (IZVW), Würzburg, 2004 (techreport)

[BibTex]

[BibTex]


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Phenotypic Characterization of Human Chondrocyte Cell Line C-20/A4: A Comparison between Monolayer and Alginate Suspension Culture

Finger, F., Schorle, C., Söder, S., Zien, A., Goldring, M., Aigner, T.

Cells Tissues Organs, 178(2):65-77, 2004 (article)

Abstract
DNA microarray analysis was used to investigate the molecular phenotype of one of the first human chondrocyte cell lines, C-20/A4, derived from juvenile costal chondrocytes by immortalization with origin-defective simian virus 40 large T antigen. Clontech Human Cancer Arrays 1.2 and quantitative PCR were used to examine gene expression profiles of C-20/A4 cells cultured in the presence of serum in monolayer and alginate beads. In monolayer cultures, genes involved in cell proliferation were strongly upregulated compared to those expressed by human adult articular chondrocytes in primary culture. Of the cell cycle-regulated genes, only two, the CDK regulatory subunit and histone H4, were downregulated after culture in alginate beads, consistent with the ability of these cells to proliferate in suspension culture. In contrast, the expression of several genes that are involved in pericellular matrix formation, including MMP-14, COL6A1, fibronectin, biglycan and decorin, was upregulated when the C-20/A4 cells were transferred to suspension culture in alginate. Also, nexin-1, vimentin, and IGFBP-3, which are known to be expressed by primary chondrocytes, were differentially expressed in our study. Consistent with the proliferative phenotype of this cell line, few genes involved in matrix synthesis and turnover were highly expressed in the presence of serum. These results indicate that immortalized chondrocyte cell lines, rather than substituting for primary chondrocytes, may serve as models for extending findings on chondrocyte function not achievable by the use of primary chondrocytes.

[BibTex]

[BibTex]


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Kernel Methods and their Potential Use in Signal Processing

Perez-Cruz, F., Bousquet, O.

IEEE Signal Processing Magazine, (Special issue on Signal Processing for Mining), 2004 (article) Accepted

PostScript [BibTex]

PostScript [BibTex]


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Concentration Inequalities

Boucheron, S., Lugosi, G., Bousquet, O.

In Lecture Notes in Artificial Intelligence 3176, pages: 208-240, (Editors: Bousquet, O., U. von Luxburg and G. Rätsch), Springer, Heidelberg, Germany, 2004 (inbook)

PDF [BibTex]

PDF [BibTex]


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Kernels for graphs

Kashima, H., Tsuda, K., Inokuchi, A.

In pages: 155-170, (Editors: Schoelkopf, B., K. Tsuda and J.P. Vert), MIT Press, Cambridge, MA; USA, 2004 (inbook)

PDF [BibTex]

PDF [BibTex]


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A primer on molecular biology

Zien, A.

In pages: 3-34, (Editors: Schoelkopf, B., K. Tsuda and J. P. Vert), MIT Press, Cambridge, MA, USA, 2004 (inbook)

Abstract
Modern molecular biology provides a rich source of challenging machine learning problems. This tutorial chapter aims to provide the necessary biological background knowledge required to communicate with biologists and to understand and properly formalize a number of most interesting problems in this application domain. The largest part of the chapter (its first section) is devoted to the cell as the basic unit of life. Four aspects of cells are reviewed in sequence: (1) the molecules that cells make use of (above all, proteins, RNA, and DNA); (2) the spatial organization of cells (``compartmentalization''); (3) the way cells produce proteins (``protein expression''); and (4) cellular communication and evolution (of cells and organisms). In the second section, an overview is provided of the most frequent measurement technologies, data types, and data sources. Finally, important open problems in the analysis of these data (bioinformatics challenges) are briefly outlined.

PDF PostScript Web [BibTex]

PDF PostScript Web [BibTex]


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Implicit Wiener series for capturing higher-order interactions in images

Franz, M., Schölkopf, B.

Sensory coding and the natural environment, (Editors: Olshausen, B.A. and M. Lewicki), 2004 (poster)

Abstract
The information about the objects in an image is almost exclusively described by the higher-order interactions of its pixels. The Wiener series is one of the standard methods to systematically characterize these interactions. However, the classical estimation method of the Wiener expansion coefficients via cross-correlation suffers from severe problems that prevent its application to high-dimensional and strongly nonlinear signals such as images. We propose an estimation method based on regression in a reproducing kernel Hilbert space that overcomes these problems using polynomial kernels as known from Support Vector Machines and other kernel-based methods. Numerical experiments show performance advantages in terms of convergence, interpretability and system sizes that can be handled. By the time of the conference, we will be able to present first results on the higher-order structure of natural images.

[BibTex]

[BibTex]


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Classification and Memory Behaviour of Man Revisited by Machine

Graf, A., Wichmann, F., Bülthoff, H., Schölkopf, B.

CSHL Meeting on Computational & Systems Neuroscience (COSYNE), 2004 (poster)

[BibTex]

[BibTex]


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Advanced Statistical Learning Theory

Bousquet, O.

Machine Learning Summer School, 2004 (talk)

PDF [BibTex]

PDF [BibTex]


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Learning Movement Primitives

Schaal, S., Peters, J., Nakanishi, J., Ijspeert, A.

In 11th International Symposium on Robotics Research (ISRR2003), pages: 561-572, (Editors: Dario, P. and Chatila, R.), Springer, ISRR, 2004, clmc (inproceedings)

Abstract
This paper discusses a comprehensive framework for modular motor control based on a recently developed theory of dynamic movement primitives (DMP). DMPs are a formulation of movement primitives with autonomous nonlinear differential equations, whose time evolution creates smooth kinematic control policies. Model-based control theory is used to convert the outputs of these policies into motor commands. By means of coupling terms, on-line modifications can be incorporated into the time evolution of the differential equations, thus providing a rather flexible and reactive framework for motor planning and execution. The linear parameterization of DMPs lends itself naturally to supervised learning from demonstration. Moreover, the temporal, scale, and translation invariance of the differential equations with respect to these parameters provides a useful means for movement recognition. A novel reinforcement learning technique based on natural stochastic policy gradients allows a general approach of improving DMPs by trial and error learning with respect to almost arbitrary optimization criteria. We demonstrate the different ingredients of the DMP approach in various examples, involving skill learning from demonstration on the humanoid robot DB, and learning biped walking from demonstration in simulation, including self-improvement of the movement patterns towards energy efficiency through resonance tuning.

link (url) DOI [BibTex]

link (url) DOI [BibTex]

2002


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Real-Time Statistical Learning for Oculomotor Control and Visuomotor Coordination

Vijayakumar, S., Souza, A., Peters, J., Conradt, J., Rutkowski, T., Ijspeert, A., Nakanishi, J., Inoue, M., Shibata, T., Wiryo, A., Itti, L., Amari, S., Schaal, S.

(Editors: Becker, S. , S. Thrun, K. Obermayer), Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), December 2002 (poster)

Web [BibTex]

2002

Web [BibTex]


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Optimized Support Vector Machines for Nonstationary Signal Classification

Davy, M., Gretton, A., Doucet, A., Rayner, P.

IEEE Signal Processing Letters, 9(12):442-445, December 2002 (article)

Abstract
This letter describes an efficient method to perform nonstationary signal classification. A support vector machine (SVM) algorithm is introduced and its parameters optimised in a principled way. Simulations demonstrate that our low complexity method outperforms state-of-the-art nonstationary signal classification techniques.

PostScript Web DOI [BibTex]

PostScript Web DOI [BibTex]


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Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond

Schölkopf, B., Smola, A.

pages: 644, Adaptive Computation and Machine Learning, MIT Press, Cambridge, MA, USA, December 2002, Parts of this book, including an introduction to kernel methods, can be downloaded here. (book)

Abstract
In the 1990s, a new type of learning algorithm was developed, based on results from statistical learning theory: the Support Vector Machine (SVM). This gave rise to a new class of theoretically elegant learning machines that use a central concept of SVMs-kernels—for a number of learning tasks. Kernel machines provide a modular framework that can be adapted to different tasks and domains by the choice of the kernel function and the base algorithm. They are replacing neural networks in a variety of fields, including engineering, information retrieval, and bioinformatics. Learning with Kernels provides an introduction to SVMs and related kernel methods. Although the book begins with the basics, it also includes the latest research. It provides all of the concepts necessary to enable a reader equipped with some basic mathematical knowledge to enter the world of machine learning using theoretically well-founded yet easy-to-use kernel algorithms and to understand and apply the powerful algorithms that have been developed over the last few years.

Web [BibTex]

Web [BibTex]


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Surface-slant-from-texture discrimination: Effects of slant level and texture type

Rosas, P., Wichmann, F., Wagemans, J.

Journal of Vision, 2(7):300, Second Annual Meeting of the Vision Sciences Society (VSS), November 2002 (poster)

Abstract
The problem of surface-slant-from-texture was studied psychophysically by measuring the performances of five human subjects in a slant-discrimination task with a number of different types of textures: uniform lattices, randomly displaced lattices, polka dots, Voronoi tessellations, orthogonal sinusoidal plaid patterns, fractal or 1/f noise, “coherent” noise and a “diffusion-based” texture (leopard skin-like). The results show: (1) Improving performance with larger slants for all textures. (2) A “non-symmetrical” performance around a particular slant characterized by a psychometric function that is steeper in the direction of the more slanted orientation. (3) For sufficiently large slants (66 deg) there are no major differences in performance between any of the different textures. (4) For slants at 26, 37 and 53 degrees, however, there are marked differences between the different textures. (5) The observed differences in performance across textures for slants up to 53 degrees are systematic within subjects, and nearly so across them. This allows a rank-order of textures to be formed according to their “helpfulness” — that is, how easy the discrimination task is when a particular texture is mapped on the surface. Polka dots tended to allow the best slant discrimination performance, noise patterns the worst up to the large slant of 66 degrees at which performance was almost independent of the particular texture chosen. Finally, our large number of 2AFC trials (approximately 2800 trials per texture across subjects) and associated tight confidence intervals may enable us to find out about which statistical properties of the textures could be responsible for surface-slant-from-texture estimation, with the ultimate goal of being able to predict observer performance for any arbitrary texture.

Web DOI [BibTex]

Web DOI [BibTex]


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Modelling Contrast Transfer in Spatial Vision

Wichmann, F.

Journal of Vision, 2(10):7, Second Annual Meeting of the Vision Sciences Society (VSS), November 2002 (poster)

Abstract
Much of our information about spatial vision comes from detection experiments involving low-contrast stimuli. Contrast discrimination experiments provide one way to explore the visual system's response to stimuli of higher contrast, the results of which allow different models of contrast processing (e.g. energy versus gain-control models) to be critically assessed (Wichmann & Henning, 1999). Studies of detection and discrimination using pulse train stimuli in noise, on the other hand, make predictions about the number, position and properties of noise sources within the processing stream (Henning, Bird & Wichmann, 2002). Here I report modelling results combining data from both sinusoidal and pulse train experiments in and without noise to arrive at a more tightly constrained model of early spatial vision.

Web DOI [BibTex]

Web DOI [BibTex]


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Gender Classification of Human Faces

Graf, A., Wichmann, F.

In Biologically Motivated Computer Vision, pages: 1-18, (Editors: Bülthoff, H. H., S.W. Lee, T. A. Poggio and C. Wallraven), Springer, Berlin, Germany, Second International Workshop on Biologically Motivated Computer Vision (BMCV), November 2002 (inproceedings)

Abstract
This paper addresses the issue of combining pre-processing methods—dimensionality reduction using Principal Component Analysis (PCA) and Locally Linear Embedding (LLE)—with Support Vector Machine (SVM) classification for a behaviorally important task in humans: gender classification. A processed version of the MPI head database is used as stimulus set. First, summary statistics of the head database are studied. Subsequently the optimal parameters for LLE and the SVM are sought heuristically. These values are then used to compare the original face database with its processed counterpart and to assess the behavior of a SVM with respect to changes in illumination and perspective of the face images. Overall, PCA was superior in classification performance and allowed linear separability.

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


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Insect-Inspired Estimation of Self-Motion

Franz, MO., Chahl, JS.

In Biologically Motivated Computer Vision, (2525):171-180, LNCS, (Editors: Bülthoff, H.H. , S.W. Lee, T.A. Poggio, C. Wallraven), Springer, Berlin, Germany, Second International Workshop on Biologically Motivated Computer Vision (BMCV), November 2002 (inproceedings)

Abstract
The tangential neurons in the fly brain are sensitive to the typical optic flow patterns generated during self-motion. In this study, we examine whether a simplified linear model of these neurons can be used to estimate self-motion from the optic flow. We present a theory for the construction of an optimal linear estimator incorporating prior knowledge about the environment. The optimal estimator is tested on a gantry carrying an omnidirectional vision sensor. The experiments show that the proposed approach leads to accurate and robust estimates of rotation rates, whereas translation estimates turn out to be less reliable.

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


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Pulse train detection and discrimination in pink noise

Henning, G., Wichmann, F., Bird, C.

Journal of Vision, 2(7):229, Second Annual Meeting of the Vision Sciences Society (VSS), November 2002 (poster)

Abstract
Much of our information about spatial vision comes from detection experiments involving low-contrast stimuli. Contrast discrimination experiments provide one way to explore the visual system's response to stimuli of higher contrast. We explored both detection and contrast discrimination performance with sinusoidal and "pulse-train" (or line) gratings. Both types of grating had a fundamental spatial frequency of 2.09-c/deg but the pulse-train, ideally, contains, in addition to its fundamental component, all the harmonics of the fundamental. Although the 2.09-c/deg pulse-train produced on the display was measured and shown to contain at least 8 harmonics at equal contrast, it was no more detectable than its most detectable component; no benefit from having additional information at the harmonics was measurable. The addition of broadband "pink" noise, designed to equalize the detectability of the components of the pulse train, made it about a factor of four more detectable than any of its components. However, in contrast-discrimination experiments, with an in-phase pedestal or masking grating of the same form and phase as the signal and 15% contrast, the noise did not improve the discrimination performance of the pulse train relative to that of its sinusoidal components. In contrast, a 2.09-c/deg "super train," constructed to have 8 equally detectable harmonics, was a factor of five more detectable than any of its components. We discuss the implications of these observations for models of early vision in particular the implications for possible sources of internal noise.

Web DOI [BibTex]

Web DOI [BibTex]


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A New Discriminative Kernel from Probabilistic Models

Tsuda, K., Kawanabe, M., Rätsch, G., Sonnenburg, S., Müller, K.

Neural Computation, 14(10):2397-2414, October 2002 (article)

PDF [BibTex]

PDF [BibTex]


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Combining sensory Information to Improve Visualization

Ernst, M., Banks, M., Wichmann, F., Maloney, L., Bülthoff, H.

In Proceedings of the Conference on Visualization ‘02 (VIS ‘02), pages: 571-574, (Editors: Moorhead, R. , M. Joy), IEEE, Piscataway, NJ, USA, IEEE Conference on Visualization (VIS '02), October 2002 (inproceedings)

Abstract
Seemingly effortlessly the human brain reconstructs the three-dimensional environment surrounding us from the light pattern striking the eyes. This seems to be true across almost all viewing and lighting conditions. One important factor for this apparent easiness is the redundancy of information provided by the sensory organs. For example, perspective distortions, shading, motion parallax, or the disparity between the two eyes' images are all, at least partly, redundant signals which provide us with information about the three-dimensional layout of the visual scene. Our brain uses all these different sensory signals and combines the available information into a coherent percept. In displays visualizing data, however, the information is often highly reduced and abstracted, which may lead to an altered perception and therefore a misinterpretation of the visualized data. In this panel we will discuss mechanisms involved in the combination of sensory information and their implications for simulations using computer displays, as well as problems resulting from current display technology such as cathode-ray tubes.

PDF Web [BibTex]

PDF Web [BibTex]


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Sampling Techniques for Kernel Methods

Achlioptas, D., McSherry, F., Schölkopf, B.

In Advances in neural information processing systems 14 , pages: 335-342, (Editors: TG Dietterich and S Becker and Z Ghahramani), MIT Press, Cambridge, MA, USA, 15th Annual Neural Information Processing Systems Conference (NIPS), September 2002 (inproceedings)

Abstract
We propose randomized techniques for speeding up Kernel Principal Component Analysis on three levels: sampling and quantization of the Gram matrix in training, randomized rounding in evaluating the kernel expansions, and random projections in evaluating the kernel itself. In all three cases, we give sharp bounds on the accuracy of the obtained approximations.

PDF Web [BibTex]

PDF Web [BibTex]


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The Infinite Hidden Markov Model

Beal, MJ., Ghahramani, Z., Rasmussen, CE.

In Advances in Neural Information Processing Systems 14, pages: 577-584, (Editors: Dietterich, T.G. , S. Becker, Z. Ghahramani), MIT Press, Cambridge, MA, USA, Fifteenth Annual Neural Information Processing Systems Conference (NIPS), September 2002 (inproceedings)

Abstract
We show that it is possible to extend hidden Markov models to have a countably infinite number of hidden states. By using the theory of Dirichlet processes we can implicitly integrate out the infinitely many transition parameters, leaving only three hyperparameters which can be learned from data. These three hyperparameters define a hierarchical Dirichlet process capable of capturing a rich set of transition dynamics. The three hyperparameters control the time scale of the dynamics, the sparsity of the underlying state-transition matrix, and the expected number of distinct hidden states in a finite sequence. In this framework it is also natural to allow the alphabet of emitted symbols to be infinite - consider, for example, symbols being possible words appearing in English text.

PDF Web [BibTex]

PDF Web [BibTex]


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A new discriminative kernel from probabilistic models

Tsuda, K., Kawanabe, M., Rätsch, G., Sonnenburg, S., Müller, K.

In Advances in Neural Information Processing Systems 14, pages: 977-984, (Editors: Dietterich, T.G. , S. Becker, Z. Ghahramani), MIT Press, Cambridge, MA, USA, Fifteenth Annual Neural Information Processing Systems Conference (NIPS), September 2002 (inproceedings)

Abstract
Recently, Jaakkola and Haussler proposed a method for constructing kernel functions from probabilistic models. Their so called \Fisher kernel" has been combined with discriminative classi ers such as SVM and applied successfully in e.g. DNA and protein analysis. Whereas the Fisher kernel (FK) is calculated from the marginal log-likelihood, we propose the TOP kernel derived from Tangent vectors Of Posterior log-odds. Furthermore, we develop a theoretical framework on feature extractors from probabilistic models and use it for analyzing the TOP kernel. In experiments our new discriminative TOP kernel compares favorably to the Fisher kernel.

PDF Web [BibTex]

PDF Web [BibTex]


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Incorporating Invariances in Non-Linear Support Vector Machines

Chapelle, O., Schölkopf, B.

In Advances in Neural Information Processing Systems 14, pages: 609-616, (Editors: TG Dietterich and S Becker and Z Ghahramani), MIT Press, Cambridge, MA, USA, 15th Annual Neural Information Processing Systems Conference (NIPS), September 2002 (inproceedings)

Abstract
The choice of an SVM kernel corresponds to the choice of a representation of the data in a feature space and, to improve performance, it should therefore incorporate prior knowledge such as known transformation invariances. We propose a technique which extends earlier work and aims at incorporating invariances in nonlinear kernels. We show on a digit recognition task that the proposed approach is superior to the Virtual Support Vector method, which previously had been the method of choice.

PDF Web [BibTex]

PDF Web [BibTex]


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Functional Genomics of Osteoarthritis

Aigner, T., Bartnik, E., Zien, A., Zimmer, R.

Pharmacogenomics, 3(5):635-650, September 2002 (article)

Web [BibTex]

Web [BibTex]


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Kernel feature spaces and nonlinear blind source separation

Harmeling, S., Ziehe, A., Kawanabe, M., Müller, K.

In Advances in Neural Information Processing Systems 14, pages: 761-768, (Editors: Dietterich, T. G., S. Becker, Z. Ghahramani), MIT Press, Cambridge, MA, USA, Fifteenth Annual Neural Information Processing Systems Conference (NIPS), September 2002 (inproceedings)

Abstract
In kernel based learning the data is mapped to a kernel feature space of a dimension that corresponds to the number of training data points. In practice, however, the data forms a smaller submanifold in feature space, a fact that has been used e.g. by reduced set techniques for SVMs. We propose a new mathematical construction that permits to adapt to the intrinsic dimension and to find an orthonormal basis of this submanifold. In doing so, computations get much simpler and more important our theoretical framework allows to derive elegant kernelized blind source separation (BSS) algorithms for arbitrary invertible nonlinear mixings. Experiments demonstrate the good performance and high computational efficiency of our kTDSEP algorithm for the problem of nonlinear BSS.

PDF Web [BibTex]

PDF Web [BibTex]


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Constructing Boosting algorithms from SVMs: an application to one-class classification.

Rätsch, G., Mika, S., Schölkopf, B., Müller, K.

IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(9):1184-1199, September 2002 (article)

Abstract
We show via an equivalence of mathematical programs that a support vector (SV) algorithm can be translated into an equivalent boosting-like algorithm and vice versa. We exemplify this translation procedure for a new algorithm—one-class leveraging—starting from the one-class support vector machine (1-SVM). This is a first step toward unsupervised learning in a boosting framework. Building on so-called barrier methods known from the theory of constrained optimization, it returns a function, written as a convex combination of base hypotheses, that characterizes whether a given test point is likely to have been generated from the distribution underlying the training data. Simulations on one-class classification problems demonstrate the usefulness of our approach.

DOI [BibTex]

DOI [BibTex]


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Kernel Dependency Estimation

Weston, J., Chapelle, O., Elisseeff, A., Schölkopf, B., Vapnik, V.

(98), Max Planck Institute for Biological Cybernetics, August 2002 (techreport)

Abstract
We consider the learning problem of finding a dependency between a general class of objects and another, possibly different, general class of objects. The objects can be for example: vectors, images, strings, trees or graphs. Such a task is made possible by employing similarity measures in both input and output spaces using kernel functions, thus embedding the objects into vector spaces. Output kernels also make it possible to encode prior information and/or invariances in the loss function in an elegant way. We experimentally validate our approach on several tasks: mapping strings to strings, pattern recognition, and reconstruction from partial images.

PDF [BibTex]

PDF [BibTex]


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Phase information in the recognition of natural images

Braun, D., Wichmann, F., Gegenfurtner, K.

Perception, 31(ECVP Abstract Supplement):133, 25th European Conference on Visual Perception, August 2002 (poster)

Abstract
Fourier phase plays an important role in determining global image structure. For example, when the phase spectrum of an image of a flower is swapped with that of a tank, we usually perceive a tank, even though the amplitude spectrum is still that of the flower. Similarly, when the phase spectrum of an image is randomly swapped across frequencies, that is its Fourier energy is randomly distributed over the image, the resulting image becomes impossible to recognise. Our goal was to evaluate the effect of phase manipulations in a quantitative manner. Subjects viewed two images of natural scenes, one of which contained an animal (the target) embedded in the background. The spectra of the images were manipulated by adding random phase noise at each frequency. The phase noise was the independent variable, uniformly distributed between 0° and ±180°. Subjects were remarkably resistant to phase noise. Even with ±120° noise, subjects were still 75% correct. The proportion of correct answers closely followed the correlation between original and noise-distorted images. Thus it appears as if it was not the global phase information per se that determines our percept of natural images, but rather the effect of phase on local image features.

Web [BibTex]

Web [BibTex]


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Algorithms for Learning Function Distinguishable Regular Languages

Fernau, H., Radl, A.

In Joint IAPR International Workshop on Structural, Syntactic, and Statistical Pattern Recognition, pages: 64-73, (Editors: Caelli, T. , A. Amin, R. P.W. Duin, M. Kamel, D. de Ridder), Springer, Berlin, Germany, Joint IAPR International Workshop on Structural, Syntactic, and Statistical Pattern Recognition, August 2002 (inproceedings)

Abstract
Function distinguishable languages were introduced as a new methodology of defining characterizable subclasses of the regular languages which are learnable from text. Here, we give details on the implementation and the analysis of the corresponding learning algorithms. We also discuss problems which might occur in practical applications.

PDF DOI [BibTex]

PDF DOI [BibTex]


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Co-Clustering of Biological Networks and Gene Expression Data

Hanisch, D., Zien, A., Zimmer, R., Lengauer, T.

Bioinformatics, (Suppl 1):145S-154S, 18, July 2002 (article)

Abstract
Motivation: Large scale gene expression data are often analysed by clustering genes based on gene expression data alone, though a priori knowledge in the form of biological networks is available. The use of this additional information promises to improve exploratory analysis considerably. Results: We propose constructing a distance function which combines information from expression data and biological networks. Based on this function, we compute a joint clustering of genes and vertices of the network. This general approach is elaborated for metabolic networks. We define a graph distance function on such networks and combine it with a correlation-based distance function for gene expression measurements. A hierarchical clustering and an associated statistical measure is computed to arrive at a reasonable number of clusters. Our method is validated using expression data of the yeast diauxic shift. The resulting clusters are easily interpretable in terms of the biochemical network and the gene expression data and suggest that our method is able to automatically identify processes that are relevant under the measured conditions.

Web [BibTex]

Web [BibTex]


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Global Geometry of SVM Classifiers

Zhou, D., Xiao, B., Zhou, H., Dai, R.

Max Planck Institute for Biological Cybernetics, Tübingen, Germany, June 2002 (techreport)

Abstract
We construct an geometry framework for any norm Support Vector Machine (SVM) classifiers. Within this framework, separating hyperplanes, dual descriptions and solutions of SVM classifiers are constructed by a purely geometric fashion. In contrast with the optimization theory used in SVM classifiers, we have no complicated computations any more. Each step in our theory is guided by elegant geometric intuitions.

PDF PostScript [BibTex]

PDF PostScript [BibTex]


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Computationally Efficient Face Detection

Romdhani, S., Torr, P., Schölkopf, B., Blake, A.

(MSR-TR-2002-69), Microsoft Research, June 2002 (techreport)

Web [BibTex]

Web [BibTex]