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2015


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Assessment of tumor heterogeneity using unsupervised graph based clustering of multi-modality imaging data

Katiyar, P., Divine, M. R., Pichler, B. J., Disselhorst, J. A.

European Molecular Imaging Meeting, 2015 (poster)

[BibTex]

2015

[BibTex]


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Assessment of murine brain tissue shrinkage caused by different histological fixatives using magnetic resonance and computed tomography imaging

Wehrl, H. F., Bezrukov, I., Wiehr, S., Lehnhoff, M., Fuchs, K., Mannheim, J. G., Quintanilla-Martinez, L., Kneilling, M., Pichler, B. J., Sauter, A. W.

Histology and Histopathology, 30(5):601-613, 2015 (article)

[BibTex]

[BibTex]


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Cosmology from Cosmic Shear with DES Science Verification Data

Abbott, T., Abdalla, F. B., Allam, S., Amara, A., Annis, J., Armstrong, R., Bacon, D., Banerji, M., Bauer, A. H., Baxter, E., others,

arXiv preprint arXiv:1507.05552, 2015 (techreport)

link (url) [BibTex]

link (url) [BibTex]


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A systematic search for transiting planets in the K2 data

Foreman-Mackey, D., Montet, B., Hogg, D., Morton, T., Wang, D., Schölkopf, B.

The Astrophysical Journal, 806(2), 2015 (article)

Abstract
Photometry of stars from the K2 extension of NASA’s Kepler mission is afflicted by systematic effects caused by small (few-pixel) drifts in the telescope pointing and other spacecraft issues. We present a method for searching K2 light curves for evidence of exoplanets by simultaneously fitting for these systematics and the transit signals of interest. This method is more computationally expensive than standard search algorithms but we demonstrate that it can be efficiently implemented and used to discover transit signals. We apply this method to the full Campaign 1 data set and report a list of 36 planet candidates transiting 31 stars, along with an analysis of the pipeline performance and detection efficiency based on artificial signal injections and recoveries. For all planet candidates, we present posterior distributions on the properties of each system based strictly on the transit observables.

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Causal Inference by Identification of Vector Autoregressive Processes with Hidden Components

Geiger, P., Zhang, K., Schölkopf, B., Gong, M., Janzing, D.

In Proceedings of the 32nd International Conference on Machine Learning, 37, pages: 1917–1925, JMLR Workshop and Conference Proceedings, (Editors: F. Bach and D. Blei), JMLR, ICML, 2015 (inproceedings)

PDF link (url) Project Page [BibTex]

PDF link (url) Project Page [BibTex]


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Improved Bayesian Information Criterion for Mixture Model Selection

Mehrjou, A., Hosseini, R., Araabi, B.

Pattern Recognition Letters, 69, pages: 22-27, 2015 (article)

DOI [BibTex]

DOI [BibTex]


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Peer grading in a course on algorithms and data structures

Sajjadi, M. S. M., Alamgir, M., von Luxburg, U.

Workshop on Crowdsourcing and Machine Learning (CrowdML) Workshop on Machine Learning for Education (ML4Ed) at at the 32th International Conference on Machine Learning (ICML), 2015 (conference)

Arxiv [BibTex]

Arxiv [BibTex]


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A Random Riemannian Metric for Probabilistic Shortest-Path Tractography

Hauberg, S., Schober, M., Liptrot, M., Hennig, P., Feragen, A.

In 18th International Conference on Medical Image Computing and Computer Assisted Intervention, 9349, pages: 597-604, Lecture Notes in Computer Science, MICCAI, 2015 (inproceedings)

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Recent Methodological Advances in Causal Discovery and Inference

Spirtes, P., Zhang, K.

In 15th Conference on Theoretical Aspects of Rationality and Knowledge, pages: 23-35, (Editors: Ramanujam, R.), TARK, 2015 (inproceedings)

[BibTex]

[BibTex]


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Learning Optimal Striking Points for A Ping-Pong Playing Robot

Huang, Y., Schölkopf, B., Peters, J.

In IEEE/RSJ International Conference on Intelligent Robots and Systems, pages: 4587-4592, IROS, 2015 (inproceedings)

PDF DOI [BibTex]

PDF DOI [BibTex]


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Model-Based Relative Entropy Stochastic Search

Abdolmaleki, A., Peters, J., Neumann, G.

In Advances in Neural Information Processing Systems 28, pages: 3523-3531, (Editors: C. Cortes, N.D. Lawrence, D.D. Lee, M. Sugiyama and R. Garnett), Curran Associates, Inc., 29th Annual Conference on Neural Information Processing Systems (NIPS), 2015 (inproceedings)

link (url) [BibTex]

link (url) [BibTex]


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Modeling Spatio-Temporal Variability in Human-Robot Interaction with Probabilistic Movement Primitives

Ewerton, M., Neumann, G., Lioutikov, R., Ben Amor, H., Peters, J., Maeda, G.

In Workshop on Machine Learning for Social Robotics, ICRA, 2015 (inproceedings)

link (url) [BibTex]

link (url) [BibTex]


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Extracting Low-Dimensional Control Variables for Movement Primitives

Rueckert, E., Mundo, J., Paraschos, A., Peters, J., Neumann, G.

In IEEE International Conference on Robotics and Automation, pages: 1511-1518, ICRA, 2015 (inproceedings)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Correlation matrix nearness and completion under observation uncertainty

Alaíz, C. M., Dinuzzo, F., Sra, S.

IMA Journal of Numerical Analysis, 35(1):325-340, 2015 (article)

DOI [BibTex]

DOI [BibTex]


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Quantitative evaluation of segmentation- and atlas- based attenuation correction for PET/MR on pediatric patients

Bezrukov, I., Schmidt, H., Gatidis, S., Mantlik, F., Schäfer, J. F., Schwenzer, N., Pichler, B. J.

Journal of Nuclear Medicine, 56(7):1067-1074, 2015 (article)

DOI [BibTex]

DOI [BibTex]


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Self-calibration of optical lenses

Hirsch, M., Schölkopf, B.

In IEEE International Conference on Computer Vision (ICCV 2015), pages: 612-620, IEEE, 2015 (inproceedings)

DOI [BibTex]

DOI [BibTex]


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The DES Science Verification Weak Lensing Shear Catalogs

Jarvis, M., Sheldon, E., Zuntz, J., Kacprzak, T., Bridle, S. L., Amara, A., Armstrong, R., Becker, M. R., Bernstein, G. M., Bonnett, C., others,

arXiv preprint arXiv:1507.05603, 2015 (techreport)

link (url) [BibTex]

link (url) [BibTex]


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Sequential Image Deconvolution Using Probabilistic Linear Algebra

Gao, M.

Technical University of Munich, Germany, 2015 (mastersthesis)

[BibTex]

[BibTex]


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Justifying Information-Geometric Causal Inference

Janzing, D., Steudel, B., Shajarisales, N., Schölkopf, B.

In Measures of Complexity: Festschrift for Alexey Chervonenkis, pages: 253-265, 18, (Editors: Vovk, V., Papadopoulos, H. and Gammerman, A.), Springer, 2015 (inbook)

DOI [BibTex]

DOI [BibTex]


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Subspace Alignement based Domain Adaptation for RCNN detector

Raj, A., V., N., Tuytelaars, T.

Proceedings of the 26th British Machine Vision Conference (BMVC 2015), pages: 166.1-166.11, (Editors: Xianghua Xie and Mark W. Jones and Gary K. L. Tam), 2015 (conference)

DOI [BibTex]

DOI [BibTex]


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Telling cause from effect in deterministic linear dynamical systems

Shajarisales, N., Janzing, D., Schölkopf, B., Besserve, M.

In Proceedings of the 32nd International Conference on Machine Learning, 37, pages: 285–294, JMLR Workshop and Conference Proceedings, (Editors: F. Bach and D. Blei), JMLR, ICML, 2015 (inproceedings)

PDF Project Page Project Page [BibTex]

PDF Project Page Project Page [BibTex]


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A Cognitive Brain-Computer Interface for Patients with Amyotrophic Lateral Sclerosis

Hohmann, M. R., Fomina, T., Jayaram, V., Widmann, N., Förster, C., Müller vom Hagen, J., Synofzik, M., Schölkopf, B., Schöls, L., Grosse-Wentrup, M.

In Proceedings of the 2015 IEEE International Conference on Systems, Man, and Cybernetics, pages: 3187-3191, SMC, 2015 (inproceedings)

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Probabilistic numerics and uncertainty in computations

Hennig, P., Osborne, M. A., Girolami, M.

Proceedings of the Royal Society of London A: Mathematical, Physical and Engineering Sciences, 471(2179), 2015 (article)

Abstract
We deliver a call to arms for probabilistic numerical methods: algorithms for numerical tasks, including linear algebra, integration, optimization and solving differential equations, that return uncertainties in their calculations. Such uncertainties, arising from the loss of precision induced by numerical calculation with limited time or hardware, are important for much contemporary science and industry. Within applications such as climate science and astrophysics, the need to make decisions on the basis of computations with large and complex data have led to a renewed focus on the management of numerical uncertainty. We describe how several seminal classic numerical methods can be interpreted naturally as probabilistic inference. We then show that the probabilistic view suggests new algorithms that can flexibly be adapted to suit application specifics, while delivering improved empirical performance. We provide concrete illustrations of the benefits of probabilistic numeric algorithms on real scientific problems from astrometry and astronomical imaging, while highlighting open problems with these new algorithms. Finally, we describe how probabilistic numerical methods provide a coherent framework for identifying the uncertainty in calculations performed with a combination of numerical algorithms (e.g. both numerical optimizers and differential equation solvers), potentially allowing the diagnosis (and control) of error sources in computations.

PDF DOI Project Page [BibTex]

PDF DOI Project Page [BibTex]


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Efficient Learning of Linear Separators under Bounded Noise

Awasthi, P., Balcan, M., Haghtalab, N., Urner, R.

In Proceedings of the 28th Conference on Learning Theory, 40, pages: 167-190, (Editors: Grünwald, P. and Hazan, E. and Kale, S.), JMLR, COLT, 2015 (inproceedings)

link (url) [BibTex]

link (url) [BibTex]


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Learning multiple collaborative tasks with a mixture of Interaction Primitives

Ewerton, M., Neumann, G., Lioutikov, R., Ben Amor, H., Peters, J., Maeda, G.

In IEEE International Conference on Robotics and Automation, pages: 1535-1542, ICRA, 2015 (inproceedings)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Disparity estimation from a generative light field model

Köhler, R., Schölkopf, B., Hirsch, M.

IEEE International Conference on Computer Vision (ICCV 2015), Workshop on Inverse Rendering, 2015, Note: This work has been presented as a poster and is not included in the workshop proceedings. (poster)

[BibTex]

[BibTex]


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Mass and galaxy distributions of four massive galaxy clusters from Dark Energy Survey Science Verification data

Melchior, P., Suchyta, E., Huff, E., Hirsch, M., Kacprzak, T., Rykoff, E., Gruen, D., Armstrong, R., Bacon, D., Bechtol, K., others,

Monthly Notices of the Royal Astronomical Society, 449(3):2219-2238, Oxford University Press, 2015 (article)

DOI [BibTex]

DOI [BibTex]


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Causal Inference in Neuroimaging

Casarsa de Azevedo, L.

Graduate Training Centre of Neuroscience, University of Tübingen, Germany, 2015 (mastersthesis)

[BibTex]

[BibTex]


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The effect of frowning on attention

Ibarra Chaoul, A.

Graduate Training Centre of Neuroscience, University of Tübingen, Germany, 2015 (mastersthesis)

[BibTex]

[BibTex]


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Practical Probabilistic Programming with Monads

Ścibior, A., Ghahramani, Z., Gordon, A. D.

Proceedings of the 2015 ACM SIGPLAN Symposium on Haskell, pages: 165-176, Haskell ’15, ACM, 2015 (conference)

DOI [BibTex]

DOI [BibTex]


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The search for single exoplanet transits in the Kepler light curves

Foreman-Mackey, D., Hogg, D. W., Schölkopf, B.

IAU General Assembly, 22, pages: 2258352, 2015 (talk)

link (url) [BibTex]

link (url) [BibTex]

2014


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Modeling the polygenic architecture of complex traits

Rakitsch, Barbara

Eberhard Karls Universität Tübingen, November 2014 (phdthesis)

[BibTex]

2014

[BibTex]


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Human Pose Estimation with Fields of Parts

Kiefel, M., Gehler, P.

In Computer Vision – ECCV 2014, LNCS 8693, pages: 331-346, Lecture Notes in Computer Science, (Editors: Fleet, David and Pajdla, Tomas and Schiele, Bernt and Tuytelaars, Tinne), Springer, 13th European Conference on Computer Vision, September 2014 (inproceedings)

Abstract
This paper proposes a new formulation of the human pose estimation problem. We present the Fields of Parts model, a binary Conditional Random Field model designed to detect human body parts of articulated people in single images. The Fields of Parts model is inspired by the idea of Pictorial Structures, it models local appearance and joint spatial configuration of the human body. However the underlying graph structure is entirely different. The idea is simple: we model the presence and absence of a body part at every possible position, orientation, and scale in an image with a binary random variable. This results into a vast number of random variables, however, we show that approximate inference in this model is efficient. Moreover we can encode the very same appearance and spatial structure as in Pictorial Structures models. This approach allows us to combine ideas from segmentation and pose estimation into a single model. The Fields of Parts model can use evidence from the background, include local color information, and it is connected more densely than a kinematic chain structure. On the challenging Leeds Sports Poses dataset we improve over the Pictorial Structures counterpart by 5.5% in terms of Average Precision of Keypoints (APK).

website pdf DOI Project Page [BibTex]

website pdf DOI Project Page [BibTex]


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Probabilistic Progress Bars

Kiefel, M., Schuler, C., Hennig, P.

In Conference on Pattern Recognition (GCPR), 8753, pages: 331-341, Lecture Notes in Computer Science, (Editors: Jiang, X., Hornegger, J., and Koch, R.), Springer, GCPR, September 2014 (inproceedings)

Abstract
Predicting the time at which the integral over a stochastic process reaches a target level is a value of interest in many applications. Often, such computations have to be made at low cost, in real time. As an intuitive example that captures many features of this problem class, we choose progress bars, a ubiquitous element of computer user interfaces. These predictors are usually based on simple point estimators, with no error modelling. This leads to fluctuating behaviour confusing to the user. It also does not provide a distribution prediction (risk values), which are crucial for many other application areas. We construct and empirically evaluate a fast, constant cost algorithm using a Gauss-Markov process model which provides more information to the user.

website+code pdf DOI Project Page [BibTex]

website+code pdf DOI Project Page [BibTex]


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Seeing the Arrow of Time

Pickup, L., Zheng, P., Donglai, W., YiChang, S., Changshui, Z., Zisserman, A., Schölkopf, B., Freeman, W.

Computer Vision and Pattern Recognition (CVPR), 2014 IEEE Conference on, pages: 2043-2050, IEEE, CVPR, June 2014 (conference)

DOI [BibTex]

DOI [BibTex]


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Probabilistic Solutions to Differential Equations and their Application to Riemannian Statistics

Hennig, P., Hauberg, S.

In Proceedings of the 17th International Conference on Artificial Intelligence and Statistics, 33, pages: 347-355, JMLR: Workshop and Conference Proceedings, (Editors: S Kaski and J Corander), Microtome Publishing, Brookline, MA, AISTATS, April 2014 (inproceedings)

Abstract
We study a probabilistic numerical method for the solution of both boundary and initial value problems that returns a joint Gaussian process posterior over the solution. Such methods have concrete value in the statistics on Riemannian manifolds, where non-analytic ordinary differential equations are involved in virtually all computations. The probabilistic formulation permits marginalising the uncertainty of the numerical solution such that statistics are less sensitive to inaccuracies. This leads to new Riemannian algorithms for mean value computations and principal geodesic analysis. Marginalisation also means results can be less precise than point estimates, enabling a noticeable speed-up over the state of the art. Our approach is an argument for a wider point that uncertainty caused by numerical calculations should be tracked throughout the pipeline of machine learning algorithms.

pdf Youtube Supplements Project page link (url) Project Page [BibTex]

pdf Youtube Supplements Project page link (url) Project Page [BibTex]


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Method and device for blind correction of optical aberrations in a digital image

Schuler, C., Hirsch, M., Harmeling, S., Schölkopf, B.

International Patent Application, No. PCT/EP2012/068868, April 2014 (patent)

[BibTex]


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A Visual Analytics Approach to Study Anatomic Covariation

Hermann, M., Schunke, A., Schultz, T., Klein, R.

In Proceedings of IEEE Pacific Visualization 2014, pages: 161-168, March 2014 (inproceedings)

Abstract
Gaining insight into anatomic covariation helps the understanding of organismic shape variability in general and is of particular interest for delimiting morphological modules. Generation of hypotheses on structural covariation is undoubtedly a highly creative process, and as such, requires an exploratory approach. In this work we propose a new local anatomic covariance tensor which enables interactive visualizations to explore covariation at different levels of detail, stimulating rapid formation and (qualitative) evaluation of hypotheses. The effectiveness of the presented approach is demonstrated on a muCT dataset of mouse mandibles for which results from the literature are successfully reproduced, while providing a more detailed representation of covariation compared to state-of-the-art methods.

PDF DOI [BibTex]

PDF DOI [BibTex]


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Learning Motor Skills: From Algorithms to Robot Experiments

Kober, J., Peters, J.

97, pages: 191, Springer Tracts in Advanced Robotics, Springer, 2014 (book)

DOI [BibTex]

DOI [BibTex]


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Multi-Task Feature Selection on Multiple Networks via Maximum Flows

Sugiyama, M., Azencott, C., Grimm, D., Kawahara, Y., Borgwardt, K.

In Proceedings of the 2014 SIAM International Conference on Data Mining , pages: 199-207, SIAM, 2014 (inproceedings)

Web PDF DOI [BibTex]

Web PDF DOI [BibTex]


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Quantifying Information Overload in Social Media and its Impact on Social Contagions

Gomez Rodriguez, M., Gummadi, K., Schölkopf, B.

In Proceedings of the Eighth International Conference on Weblogs and Social Media, pages: 170-179, (Editors: E. Adar, P. Resnick, M. De Choudhury, B. Hogan, and A. Oh), AAAI Press, ICWSM, 2014 (inproceedings)

Web Project Page [BibTex]

Web Project Page [BibTex]


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Estimating Diffusion Network Structures: Recovery Conditions, Sample Complexity & Soft-thresholding Algorithm

Daneshmand, H., Gomez Rodriguez, M., Song, L., Schölkopf, B.

In Proceedings of the 31st International Conference on Machine Learning, W&CP 32 (1), pages: 793-801, (Editors: Eric P. Xing and Tony Jebara), JMLR, ICML, 2014 (inproceedings)

PDF Project Page [BibTex]

PDF Project Page [BibTex]


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Interaction Primitives for Human-Robot Cooperation Tasks

Ben Amor, H., Neumann, G., Kamthe, S., Kroemer, O., Peters, J.

In Proceedings of 2014 IEEE International Conference on Robotics and Automation, pages: 2831-2837, IEEE, ICRA, 2014 (inproceedings)

PDF DOI [BibTex]

PDF DOI [BibTex]


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Learning to Predict Phases of Manipulation Tasks as Hidden States

Kroemer, O., van Hoof, H., Neumann, G., Peters, J.

In Proceedings of 2014 IEEE International Conference on Robotics and Automation, pages: 4009-4014, IEEE, ICRA, 2014 (inproceedings)

PDF DOI [BibTex]

PDF DOI [BibTex]


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Visualizing Uncertainty in HARDI Tractography Using Superquadric Streamtubes

Wiens, V., Schlaffke, L., Schmidt-Wilcke, T., Schultz, T.

In Eurographics Conference on Visualization, Short Papers, (Editors: Elmqvist, N. and Hlawitschka, M. and Kennedy, J.), EuroVis, 2014 (inproceedings)

Abstract
Standard streamtubes for the visualization of diffusion MRI data are rendered either with a circular or with an elliptic cross section whose aspect ratio indicates the relative magnitudes of the medium and minor eigenvalues. Inspired by superquadric tensor glyphs, we propose to render streamtubes with a superquadric cross section, which develops sharp edges to more clearly convey the orientation of the second and third eigenvectors where they are uniquely defined, while maintaining a circular shape when the smaller two eigenvalues are equal. As a second contribution, we apply our novel superquadric streamtubes to visualize uncertainty in the tracking direction of HARDI tractography, which we represent using a novel propagation uncertainty tensor.

link (url) DOI Project Page [BibTex]

link (url) DOI Project Page [BibTex]


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A Permutation-Based Kernel Conditional Independence Test

Doran, G., Muandet, K., Zhang, K., Schölkopf, B.

In Proceedings of the 30th Conference on Uncertainty in Artificial Intelligence (UAI2014), pages: 132-141, (Editors: Nevin L. Zhang and Jin Tian), AUAI Press Corvallis, Oregon, UAI2014, 2014 (inproceedings)

PDF Project Page [BibTex]

PDF Project Page [BibTex]


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A unifying view of representer theorems

Argyriou, A., Dinuzzo, F.

In Proceedings of the 31th International Conference on Machine Learning, 32, pages: 748-756, (Editors: Xing, E. P. and Jebera, T.), ICML, 2014 (inproceedings)

PDF PDF [BibTex]

PDF PDF [BibTex]


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Riemannian Sparse Coding for Positive Definite Matrices

Cherian, A., Sra, S.

In 13th European Conference on Computer Vision, LNCS 8691, pages: 299-314, (Editors: Fleet, D., Pajdla, T., Schiele, B., and Tuytelaars, T.), Springer, ECCV, 2014 (inproceedings)

DOI [BibTex]

DOI [BibTex]