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2013


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Identifying Finite Mixtures of Nonparametric Product Distributions and Causal Inference of Confounders

Sgouritsa, E., Janzing, D., Peters, J., Schölkopf, B.

In Proceedings of the 29th Conference on Uncertainty in Artificial Intelligence (UAI), pages: 556-565, (Editors: A Nicholson and P Smyth), AUAI Press Corvallis, Oregon, USA, UAI, 2013 (inproceedings)

PDF [BibTex]

2013

PDF [BibTex]


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Improving alpha matting and motion blurred foreground estimation

Köhler, R., Hirsch, M., Schölkopf, B., Harmeling, S.

In IEEE Conference on Image Processing (ICIP), pages: 3446-3450, IEEE, ICIP, 2013 (inproceedings)

PDF DOI [BibTex]

PDF DOI [BibTex]


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One-class Support Measure Machines for Group Anomaly Detection

Muandet, K., Schölkopf, B.

29th Conference on Uncertainty in Artificial Intelligence (UAI), 2013 (poster)

PDF [BibTex]

PDF [BibTex]


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Towards Robot Skill Learning: From Simple Skills to Table Tennis

Peters, J., Kober, J., Mülling, K., Kroemer, O., Neumann, G.

In Machine Learning and Knowledge Discovery in Databases, Proceedings of the European Conference on Machine Learning, Part III (ECML 2013), LNCS 8190, pages: 627-631, (Editors: Blockeel, H.,Kersting, K., Nijssen, S., and Zelezný, F.), Springer, 2013 (inproceedings)

PDF DOI [BibTex]

PDF DOI [BibTex]


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Nonparametric dynamics estimation for time periodic systems

Klenske, E., Zeilinger, M., Schölkopf, B., Hennig, P.

In Proceedings of the 51st Annual Allerton Conference on Communication, Control, and Computing, pages: 486-493 , 2013 (inproceedings)

PDF DOI [BibTex]

PDF DOI [BibTex]


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Scalable kernels for graphs with continuous attributes

Feragen, A., Kasenburg, N., Petersen, J., de Bruijne, M., Borgwardt, KM.

In Advances in Neural Information Processing Systems 26, pages: 216-224, (Editors: C.J.C. Burges and L. Bottou and M. Welling and Z. Ghahramani and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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The Randomized Dependence Coefficient

Lopez-Paz, D., Hennig, P., Schölkopf, B.

Neural Information Processing Systems (NIPS), 2013 (poster)

PDF [BibTex]

PDF [BibTex]


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Characterization of different types of sharp-wave ripple signatures in the CA1 of the macaque hippocampus

Ramirez-Villegas, J., Logothetis, N., Besserve, M.

4th German Neurophysiology PhD Meeting Networks, 2013 (poster)

Web [BibTex]

Web [BibTex]


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Auto-Calibrating Spherical Deconvolution Based on ODF Sparsity

Schultz, T., Gröschel, S.

In Proceedings of Medical Image Computing and Computer-Assisted Intervention, Part I, pages: 663-670, (Editors: K Mori and I Sakuma and Y Sato and C Barillot and N Navab), Springer, MICCAI, 2013, Lecture Notes in Computer Science, vol. 8149 (inproceedings)

DOI [BibTex]

DOI [BibTex]


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Maximum-Margin Framework for Training Data Synchronization in Large-Scale Hierarchical Classification

Babbar, R., Partalas, I., Gaussier, E., Amini, M.

In Neural Information Processing - 20th International Conference, Proceedings, Part I, Lecture Notes in Computer Science, Vol. 8226, pages: 336-343, (Editors: M Lee and A Hirose and Z-G Hou and R M Kil), Springer, ICONIP, 2013 (inproceedings)

Web [BibTex]

Web [BibTex]


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Domain Generalization via Invariant Feature Representation

Muandet, K., Balduzzi, D., Schölkopf, B.

In Proceedings of the 30th International Conference on Machine Learning, W&CP 28(1), pages: 10-18, (Editors: S Dasgupta and D McAllester), JMLR, ICML, 2013, Volume 28, number 1 (inproceedings)

Web [BibTex]

Web [BibTex]


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Learning Sequential Motor Tasks

Daniel, C., Neumann, G., Peters, J.

In Proceedings of 2013 IEEE International Conference on Robotics and Automation (ICRA 2013), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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Information-Theoretic Motor Skill Learning

Neumann, G., Kupcsik, A., Deisenroth, M., Peters, J.

In Proceedings of the 27th AAAI 2013, Workshop on Intelligent Robotic Systems (AAAI 2013), 2013 (inproceedings)

[BibTex]

[BibTex]


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Measuring Statistical Dependence via the Mutual Information Dimension

Sugiyama, M., Borgwardt, KM.

In Proceedings of the 23rd International Joint Conference on Artificial Intelligence (IJCAI 2013), pages: 1692-1698, (Editors: Francesca Rossi), AAAI Press, Menlo Park, California, IJCAI, 2013 (inproceedings)

[BibTex]

[BibTex]


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Analytical probabilistic proton dose calculation and range uncertainties

Bangert, M., Hennig, P., Oelfke, U.

In 17th International Conference on the Use of Computers in Radiation Therapy, pages: 6-11, (Editors: A. Haworth and T. Kron), ICCR, 2013 (inproceedings)

[BibTex]

[BibTex]


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Adaptivity to Local Smoothness and Dimension in Kernel Regression

Kpotufe, S., Garg, V.

In Advances in Neural Information Processing Systems 26, pages: 3075-3083, (Editors: C.J.C. Burges and L. Bottou and M. Welling and Z. Ghahramani and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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Statistical analysis of coupled time series with Kernel Cross-Spectral Density operators

Besserve, M., Logothetis, N., Schölkopf, B.

In Advances in Neural Information Processing Systems 26, pages: 2535-2543, (Editors: C.J.C. Burges, L. Bottou, M. Welling, Z. Ghahramani, and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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It is all in the noise: Efficient multi-task Gaussian process inference with structured residuals

Rakitsch, B., Lippert, C., Borgwardt, KM., Stegle, O.

In Advances in Neural Information Processing Systems 26, pages: 1466-1474, (Editors: C.J.C. Burges and L. Bottou and M. Welling and Z. Ghahramani and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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Comparative Classifier Evaluation for Web-Scale Taxonomies Using Power Law

Babbar, R., Partalas, I., Metzig, C., Gaussier, E., Amini, M.

In The Semantic Web: ESWC 2013 Satellite Events, Lecture Notes in Computer Science, Vol. 7955 , pages: 310-311, (Editors: P Cimiano and M Fernández and V Lopez and S Schlobach and J Völker), Springer, ESWC, 2013 (inproceedings)

Web [BibTex]

Web [BibTex]


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Model-based Imitation Learning by Probabilistic Trajectory Matching

Englert, P., Paraschos, A., Peters, J., Deisenroth, M.

In Proceedings of 2013 IEEE International Conference on Robotics and Automation (ICRA 2013), pages: 1922-1927, 2013 (inproceedings)

PDF DOI [BibTex]

PDF DOI [BibTex]


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Towards neurofeedback for improving visual attention

Zander, T., Battes, B., Schölkopf, B., Grosse-Wentrup, M.

In Proceedings of the Fifth International Brain-Computer Interface Meeting: Defining the Future, pages: Article ID: 086, (Editors: J.d.R. Millán, S. Gao, R. Müller-Putz, J.R. Wolpaw, and J.E. Huggins), Verlag der Technischen Universität Graz, 5th International Brain-Computer Interface Meeting, 2013, Article ID: 086 (inproceedings)

PDF DOI [BibTex]

PDF DOI [BibTex]


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A Guided Hybrid Genetic Algorithm for Feature Selection with Expensive Cost Functions

Jung, M., Zscheischler, J.

In Proceedings of the International Conference on Computational Science, 18, pages: 2337 - 2346, Procedia Computer Science, (Editors: Alexandrov, V and Lees, M and Krzhizhanovskaya, V and Dongarra, J and Sloot, PMA), Elsevier, Amsterdam, Netherlands, ICCS, 2013 (inproceedings)

Web DOI [BibTex]

Web DOI [BibTex]


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Domain Generalization via Invariant Feature Representation

Muandet, K.

30th International Conference on Machine Learning (ICML2013), 2013 (talk)

PDF [BibTex]

PDF [BibTex]


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Learning responsive robot behavior by imitation

Ben Amor, H., Vogt, D., Ewerton, M., Berger, E., Jung, B., Peters, J.

In IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2013), pages: 3257-3264, IEEE, 2013 (inproceedings)

DOI [BibTex]

DOI [BibTex]


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Learning Skills with Motor Primitives

Peters, J., Kober, J., Mülling, K., Kroemer, O., Neumann, G.

In Proceedings of the 16th Yale Workshop on Adaptive and Learning Systems, 2013 (inproceedings)

[BibTex]

[BibTex]


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Scalable Influence Estimation in Continuous-Time Diffusion Networks

Du, N., Song, L., Gomez Rodriguez, M., Zha, H.

In Advances in Neural Information Processing Systems 26, pages: 3147-3155, (Editors: C.J.C. Burges and L. Bottou and M. Welling and Z. Ghahramani and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF PDF [BibTex]

PDF PDF [BibTex]


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Rapid Distance-Based Outlier Detection via Sampling

Sugiyama, M., Borgwardt, KM.

In Advances in Neural Information Processing Systems 26, pages: 467-475, (Editors: C.J.C. Burges and L. Bottou and M. Welling and Z. Ghahramani and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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Probabilistic Movement Primitives

Paraschos, A., Daniel, C., Peters, J., Neumann, G.

In Advances in Neural Information Processing Systems 26, pages: 2616-2624, (Editors: C.J.C. Burges and L. Bottou and M. Welling and Z. Ghahramani and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF PDF [BibTex]

PDF PDF [BibTex]


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Causal Inference on Time Series using Restricted Structural Equation Models

Peters, J., Janzing, D., Schölkopf, B.

In Advances in Neural Information Processing Systems 26, pages: 154-162, (Editors: C.J.C. Burges, L. Bottou, M. Welling, Z. Ghahramani, and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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Regression-tree Tuning in a Streaming Setting

Kpotufe, S., Orabona, F.

In Advances in Neural Information Processing Systems 26, pages: 1788-1796, (Editors: C.J.C. Burges and L. Bottou and M. Welling and Z. Ghahramani and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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Density estimation from unweighted k-nearest neighbor graphs: a roadmap

von Luxburg, U., Alamgir, M.

In Advances in Neural Information Processing Systems 26, pages: 225-233, (Editors: C.J.C. Burges and L. Bottou and M. Welling and Z. Ghahramani and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

PDF [BibTex]

PDF [BibTex]


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PAC-Bayes-Empirical-Bernstein Inequality

Tolstikhin, I. O., Seldin, Y.

In Advances in Neural Information Processing Systems 26, pages: 109-117, (Editors: C.J.C. Burges, L. Bottou, M. Welling, Z. Ghahramani, and K.Q. Weinberger), 27th Annual Conference on Neural Information Processing Systems (NIPS), 2013 (inproceedings)

link (url) [BibTex]

link (url) [BibTex]


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PLAL: Cluster-based active learning

Urner, R., Wulff, S., Ben-David, S.

In Proceedings of the 26th Annual Conference on Learning Theory, 30, pages: 376-397, (Editors: Shalev-Shwartz, S. and Steinwart, I.), JMLR, COLT, 2013 (inproceedings)

link (url) [BibTex]

link (url) [BibTex]


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Monochromatic Bi-Clustering

Wulff, S., Urner, R., Ben-David, S.

In Proceedings of the 30th International Conference on Machine Learning, 28, pages: 145-153, (Editors: Dasgupta, S. and McAllester, D.), JMLR, ICML, 2013 (inproceedings)

link (url) [BibTex]

link (url) [BibTex]


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Significance of variable height-bandwidth group delay filters in the spectral reconstruction of speech

Devanshu, A., Raj, A., Hegde, R. M.

INTERSPEECH 2013, 14th Annual Conference of the International Speech Communication Association, pages: 1682-1686, 2013 (conference)

link (url) [BibTex]

link (url) [BibTex]


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Generative Multiple-Instance Learning Models For Quantitative Electromyography

Adel, T., Smith, B., Urner, R., Stashuk, D., Lizotte, D. J.

In Proceedings of the 29th Conference on Uncertainty in Artificial Intelligence, AUAI Press, UAI, 2013 (inproceedings)

link (url) [BibTex]

link (url) [BibTex]


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Automatic Malaria Diagnosis system

Mehrjou, A., Abbasian, T., Izadi, M.

In First RSI/ISM International Conference on Robotics and Mechatronics (ICRoM), pages: 205-211, 2013 (inproceedings)

DOI [BibTex]

DOI [BibTex]


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Abstraction in Decision-Makers with Limited Information Processing Capabilities

Genewein, T, Braun, DA

pages: 1-9, NIPS Workshop Planning with Information Constraints for Control, Reinforcement Learning, Computational Neuroscience, Robotics and Games, December 2013 (conference)

Abstract
A distinctive property of human and animal intelligence is the ability to form abstractions by neglecting irrelevant information which allows to separate structure from noise. From an information theoretic point of view abstractions are desirable because they allow for very efficient information processing. In artificial systems abstractions are often implemented through computationally costly formations of groups or clusters. In this work we establish the relation between the free-energy framework for decision-making and rate-distortion theory and demonstrate how the application of rate-distortion for decision-making leads to the emergence of abstractions. We argue that abstractions are induced due to a limit in information processing capacity.

link (url) [BibTex]

link (url) [BibTex]


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Bounded Rational Decision-Making in Changing Environments

Grau-Moya, J, Braun, DA

pages: 1-9, NIPS Workshop Planning with Information Constraints for Control, Reinforcement Learning, Computational Neuroscience, Robotics and Games, December 2013 (conference)

Abstract
A perfectly rational decision-maker chooses the best action with the highest utility gain from a set of possible actions. The optimality principles that describe such decision processes do not take into account the computational costs of finding the optimal action. Bounded rational decision-making addresses this problem by specifically trading off information-processing costs and expected utility. Interestingly, a similar trade-off between energy and entropy arises when describing changes in thermodynamic systems. This similarity has been recently used to describe bounded rational agents. Crucially, this framework assumes that the environment does not change while the decision-maker is computing the optimal policy. When this requirement is not fulfilled, the decision-maker will suffer inefficiencies in utility, that arise because the current policy is optimal for an environment in the past. Here we borrow concepts from non-equilibrium thermodynamics to quantify these inefficiencies and illustrate with simulations its relationship with computational resources.

link (url) [BibTex]

link (url) [BibTex]

2007


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Reaction graph kernels for discovering missing enzymes in the plant secondary metabolism

Saigo, H., Hattori, M., Tsuda, K.

NIPS Workshop on Machine Learning in Computational Biology, December 2007 (talk)

Abstract
Secondary metabolic pathway in plant is important for finding druggable candidate enzymes. However, there are many enzymes whose functions are still undiscovered especially in organism-specific metabolic pathways. We propose reaction graph kernels for automatically assigning the EC numbers to unknown enzymatic reactions in a metabolic network. Experiments are carried out on KEGG/REACTION database and our method successfully predicted the first three digits of the EC number with 83% accuracy.We also exhaustively predicted missing enzymatic functions in the plant secondary metabolism pathways, and evaluated our results in biochemical validity.

Web [BibTex]

2007

Web [BibTex]


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Positional Oligomer Importance Matrices

Sonnenburg, S., Zien, A., Philips, P., Rätsch, G.

NIPS Workshop on Machine Learning in Computational Biology, December 2007 (talk)

Abstract
At the heart of many important bioinformatics problems, such as gene finding and function prediction, is the classification of biological sequences, above all of DNA and proteins. In many cases, the most accurate classifiers are obtained by training SVMs with complex sequence kernels, for instance for transcription starts or splice sites. However, an often criticized downside of SVMs with complex kernels is that it is very hard for humans to understand the learned decision rules and to derive biological insights from them. To close this gap, we introduce the concept of positional oligomer importance matrices (POIMs) and develop an efficient algorithm for their computation. We demonstrate how they overcome the limitations of sequence logos, and how they can be used to find relevant motifs for different biological phenomena in a straight-forward way. Note that the concept of POIMs is not limited to interpreting SVMs, but is applicable to general k−mer based scoring systems.

Web [BibTex]

Web [BibTex]


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Machine Learning Algorithms for Polymorphism Detection

Schweikert, G., Zeller, G., Weigel, D., Schölkopf, B., Rätsch, G.

NIPS Workshop on Machine Learning in Computational Biology, December 2007 (talk)

Web [BibTex]

Web [BibTex]


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An Automated Combination of Kernels for Predicting Protein Subcellular Localization

Zien, A., Ong, C.

NIPS Workshop on Machine Learning in Computational Biology, December 2007 (talk)

Abstract
Protein subcellular localization is a crucial ingredient to many important inferences about cellular processes, including prediction of protein function and protein interactions.We propose a new class of protein sequence kernels which considers all motifs including motifs with gaps. This class of kernels allows the inclusion of pairwise amino acid distances into their computation. We utilize an extension of the multiclass support vector machine (SVM)method which directly solves protein subcellular localization without resorting to the common approach of splitting the problem into several binary classification problems. To automatically search over families of possible amino acid motifs, we optimize over multiple kernels at the same time. We compare our automated approach to four other predictors on three different datasets, and show that we perform better than the current state of the art. Furthermore, our method provides some insights as to which features are most useful for determining subcellular localization, which are in agreement with biological reasoning.

Web [BibTex]

Web [BibTex]


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Challenges in Brain-Computer Interface Development: Induction, Measurement, Decoding, Integration

Hill, NJ.

Invited keynote talk at the launch of BrainGain, the Dutch BCI research consortium, November 2007 (talk)

Abstract
I‘ll present a perspective on Brain-Computer Interface development from T{\"u}bingen. Some of the benefits promised by BCI technology lie in the near foreseeable future, and some further away. Our motivation is to make BCI technology feasible for the people who could benefit from what it has to offer soon: namely, people in the "completely locked-in" state. I‘ll mention some of the challenges of working with this user group, and explain the specific directions they have motivated us to take in developing experimental methods, algorithms, and software.

[BibTex]

[BibTex]


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Towards compliant humanoids: an experimental assessment of suitable task space position/orientation controllers

Nakanishi, J., Mistry, M., Peters, J., Schaal, S.

In IROS 2007, 2007, pages: 2520-2527, (Editors: Grant, E. , T. C. Henderson), IEEE Service Center, Piscataway, NJ, USA, IEEE/RSJ International Conference on Intelligent Robots and Systems, November 2007 (inproceedings)

Abstract
Compliant control will be a prerequisite for humanoid robotics if these robots are supposed to work safely and robustly in human and/or dynamic environments. One view of compliant control is that a robot should control a minimal number of degrees-of-freedom (DOFs) directly, i.e., those relevant DOFs for the task, and keep the remaining DOFs maximally compliant, usually in the null space of the task. This view naturally leads to task space control. However, surprisingly few implementations of task space control can be found in actual humanoid robots. This paper makes a first step towards assessing the usefulness of task space controllers for humanoids by investigating which choices of controllers are available and what inherent control characteristics they have—this treatment will concern position and orientation control, where the latter is based on a quaternion formulation. Empirical evaluations on an anthropomorphic Sarcos master arm illustrate the robustness of the different controllers as well as the eas e of implementing and tuning them. Our extensive empirical results demonstrate that simpler task space controllers, e.g., classical resolved motion rate control or resolved acceleration control can be quite advantageous in face of inevitable modeling errors in model-based control, and that well chosen formulations are easy to implement and quite robust, such that they are useful for humanoids.

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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MR-Based PET Attenuation Correction: Method and Validation

Hofmann, M., Steinke, F., Scheel, V., Charpiat, G., Brady, M., Schölkopf, B., Pichler, B.

2007 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS-MIC 2007), 2007(M16-6):1-2, November 2007 (poster)

Abstract
PET/MR combines the high soft tissue contrast of Magnetic Resonance Imaging (MRI) and the functional information of Positron Emission Tomography (PET). For quantitative PET information, correction of tissue photon attenuation is mandatory. Usually in conventional PET, the attenuation map is obtained from a transmission scan, which uses a rotating source, or from the CT scan in case of combined PET/CT. In the case of a PET/MR scanner, there is insufficient space for the rotating source and ideally one would want to calculate the attenuation map from the MR image instead. Since MR images provide information about proton density of the different tissue types, it is not trivial to use this data for PET attenuation correction. We present a method for predicting the PET attenuation map from a given the MR image, using a combination of atlas-registration and recognition of local patterns. Using "leave one out cross validation" we show on a database of 16 MR-CT image pairs that our method reliably allows estimating the CT image from the MR image. Subsequently, as in PET/CT, the PET attenuation map can be predicted from the CT image. On an additional dataset of MR/CT/PET triplets we quantitatively validate that our approach allows PET quantification with an error that is smaller than what would be clinically significant. We demonstrate our approach on T1-weighted human brain scans. However, the presented methods are more general and current research focuses on applying the established methods to human whole body PET/MRI applications.

PDF PDF [BibTex]

PDF PDF [BibTex]


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Estimating receptive fields without spike-triggering

Macke, J., Zeck, G., Bethge, M.

37th annual Meeting of the Society for Neuroscience (Neuroscience 2007), 37(768.1):1, November 2007 (poster)

Web [BibTex]

Web [BibTex]


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Sistema avanzato per la classificazione delle aree agricole in immagini ad elevata risoluzione geometrica: applicazione al territorio del Trentino

Arnoldi, E., Bruzzone, L., Carlin, L., Pedron, L., Persello, C.

In pages: 1-6, 11. Conferenza Nazionale ASITA, November 2007 (inproceedings)

PDF Web [BibTex]

PDF Web [BibTex]