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New Directions for Learning with Kernels and Gaussian Processes (Dagstuhl Seminar 16481)

Gretton, A., Hennig, P., Rasmussen, C., Schölkopf, B.

Dagstuhl Reports, 6(11):142-167, 2017 (book)

DOI [BibTex]


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Statistical Asymmetries Between Cause and Effect

Janzing, D.

In Time in Physics, pages: 129-139, Tutorials, Schools, and Workshops in the Mathematical Sciences, (Editors: Renner, Renato and Stupar, Sandra), Springer International Publishing, Cham, 2017 (inbook)

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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A parametric texture model based on deep convolutional features closely matches texture appearance for humans

Wallis, T. S. A., Funke, C. M., Ecker, A. S., Gatys, L. A., Wichmann, F. A., Bethge, M.

Journal of Vision, 17(12), 2017 (article)

DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Robot Learning

Peters, J., Tedrake, R., Roy, N., Morimoto, J.

In Encyclopedia of Machine Learning and Data Mining, pages: 1106-1109, 2nd, (Editors: Sammut, Claude and Webb, Geoffrey I.), Springer US, 2017 (inbook)

DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Development and Evaluation of a Portable BCI System for Remote Data Acquisition

Emde, T.

Graduate School of Neural Information Processing, Eberhard Karls Universität Tübingen, Germany, 2017 (mastersthesis)

[BibTex]

[BibTex]


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Brain-Computer Interfaces for patients with Amyotrophic Lateral Sclerosis

Fomina, T.

Eberhard Karls Universität Tübingen, Germany, 2017 (phdthesis)

[BibTex]

[BibTex]


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Model Selection for Gaussian Mixture Models

Huang, T., Peng, H., Zhang, K.

Statistica Sinica, 27(1):147-169, 2017 (article)

link (url) [BibTex]

link (url) [BibTex]


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An image-computable psychophysical spatial vision model

Schütt, H. H., Wichmann, F. A.

Journal of Vision, 17(12), 2017 (article)

DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Methods and measurements to compare men against machines

Wichmann, F. A., Janssen, D. H. J., Geirhos, R., Aguilar, G., Schütt, H. H., Maertens, M., Bethge, M.

Electronic Imaging, pages: 36-45(10), 2017 (article)

DOI [BibTex]

DOI [BibTex]


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Generalized phase locking analysis of electrophysiology data

Safavi, S., Panagiotaropoulos, T., Kapoor, V., Logothetis, N. K., Besserve, M.

ESI Systems Neuroscience Conference (ESI-SyNC 2017): Principles of Structural and Functional Connectivity, 2017 (poster)

[BibTex]

[BibTex]


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A Comparison of Autoregressive Hidden Markov Models for Multimodal Manipulations With Variable Masses

Kroemer, O., Peters, J.

IEEE Robotics and Automation Letters, 2(2):1101-1108, 2017 (article)

DOI [BibTex]

DOI [BibTex]


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Phase Estimation for Fast Action Recognition and Trajectory Generation in Human-Robot Collaboration

Maeda, G., Ewerton, M., Neumann, G., Lioutikov, R., Peters, J.

International Journal of Robotics Research, 36(13-14):1579-1594, 2017, Special Issue on the Seventeenth International Symposium on Robotics Research (article)

DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Causal models for decision making via integrative inference

Geiger, P.

University of Stuttgart, Germany, 2017 (phdthesis)

[BibTex]

[BibTex]


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A Phase-coded Aperture Camera with Programmable Optics

Chen, J., Hirsch, M., Heintzmann, R., Eberhardt, B., Lensch, H. P. A.

Electronic Imaging, 2017(17):70-75, 2017 (article)

DOI [BibTex]

DOI [BibTex]


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On Maximum Entropy and Inference

Gresele, L., Marsili, M.

Entropy, 19(12):article no. 642, 2017 (article)

link (url) [BibTex]

link (url) [BibTex]


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Towards Engagement Models that Consider Individual Factors in HRI: On the Relation of Extroversion and Negative Attitude Towards Robots to Gaze and Speech During a Human-Robot Assembly Task

Ivaldi, S., Lefort, S., Peters, J., Chetouani, M., Provasi, J., Zibetti, E.

International Journal of Social Robotics, 9(1):63-86, 2017 (article)

DOI [BibTex]


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Non-parametric Policy Search with Limited Information Loss

van Hoof, H., Neumann, G., Peters, J.

Journal of Machine Learning Research , 18(73):1-46, 2017 (article)

link (url) Project Page [BibTex]

link (url) Project Page [BibTex]


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Stability of Controllers for Gaussian Process Dynamics

Vinogradska, J., Bischoff, B., Nguyen-Tuong, D., Peters, J.

Journal of Machine Learning Research, 18(100):1-37, 2017 (article)

link (url) Project Page [BibTex]

link (url) Project Page [BibTex]


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Learning Optimal Configurations for Modeling Frowning by Transcranial Electrical Stimulation

Sücker, K.

Graduate School of Neural Information Processing, Eberhard Karls Universität Tübingen, Germany, 2017 (mastersthesis)

[BibTex]

[BibTex]


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SUV-quantification of physiological lung tissue in an integrated PET/MR-system: Impact of lung density and bone tissue

Seith, F., Schmidt, H., Gatidis, S., Bezrukov, I., Schraml, C., Pfannenberg, C., la Fougère, C., Nikolaou, K., Schwenzer, N.

PLOS ONE, 12(5):1-13, 2017 (article)

DOI [BibTex]

DOI [BibTex]

2012


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Support Vector Machines, Support Measure Machines, and Quasar Target Selection

Muandet, K.

Center for Cosmology and Particle Physics (CCPP), New York University, December 2012 (talk)

[BibTex]

2012

[BibTex]


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Hilbert Space Embedding for Dirichlet Process Mixtures

Muandet, K.

NIPS Workshop on Confluence between Kernel Methods and Graphical Models, December 2012 (talk)

[BibTex]

[BibTex]


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Jensen-Bregman LogDet Divergence with Application to Efficient Similarity Search for Covariance Matrices

Cherian, A., Sra, S., Banerjee, A., Papanikolopoulos, N.

IEEE Transactions on Pattern Analysis and Machine Intelligence, 35(9):2161-2174, December 2012 (article)

DOI [BibTex]

DOI [BibTex]


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Hippocampal-Cortical Interaction during Periods of Subcortical Silence

Logothetis, N., Eschenko, O., Murayama, Y., Augath, M., Steudel, T., Evrard, H., Besserve, M., Oeltermann, A.

Nature, 491, pages: 547-553, November 2012 (article)

Abstract
Hippocampal ripples, episodic high-frequency field-potential oscillations primarily occurring during sleep and calmness, have been described in mice, rats, rabbits, monkeys and humans, and so far they have been associated with retention of previously acquired awake experience. Although hippocampal ripples have been studied in detail using neurophysiological methods, the global effects of ripples on the entire brain remain elusive, primarily owing to a lack of methodologies permitting concurrent hippocampal recordings and whole-brain activity mapping. By combining electrophysiological recordings in hippocampus with ripple-triggered functional magnetic resonance imaging, here we show that most of the cerebral cortex is selectively activated during the ripples, whereas most diencephalic, midbrain and brainstem regions are strongly and consistently inhibited. Analysis of regional temporal response patterns indicates that thalamic activity suppression precedes the hippocampal population burst, which itself is temporally bounded by massive activations of association and primary cortical areas. These findings suggest that during off-line memory consolidation, synergistic thalamocortical activity may be orchestrating a privileged interaction state between hippocampus and cortex by silencing the output of subcortical centres involved in sensory processing or potentially mediating procedural learning. Such a mechanism would cause minimal interference, enabling consolidation of hippocampus-dependent memory.

Web DOI [BibTex]

Web DOI [BibTex]


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Scalable graph kernels

Shervashidze, N.

Eberhard Karls Universität Tübingen, Germany, October 2012 (phdthesis)

Web [BibTex]

Web [BibTex]


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Probabilistic Modelling of Expression Variation in Modern eQTL Studies

Zwießele, M.

Eberhard Karls Universität Tübingen, Germany, October 2012 (mastersthesis)

[BibTex]

[BibTex]


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Thermodynamic limits of dynamic cooling

Allahverdyan, A., Hovhannisyan, K., Janzing, D., Mahler, G.

Physical Review E, 84(4):16, October 2012 (article)

Abstract
We study dynamic cooling, where an externally driven two-level system is cooled via reservoir, a quantum system with initial canonical equilibrium state. We obtain explicitly the minimal possible temperature Tmin>0 reachable for the two-level system. The minimization goes over all unitary dynamic processes operating on the system and reservoir and over the reservoir energy spectrum. The minimal work needed to reach Tmin grows as 1/Tmin. This work cost can be significantly reduced, though, if one is satisfied by temperatures slightly above Tmin. Our results on Tmin>0 prove unattainability of the absolute zero temperature without ambiguities that surround its derivation from the entropic version of the third law. We also study cooling via a reservoir consisting of N≫1 identical spins. Here we show that Tmin∝1/N and find the maximal cooling compatible with the minimal work determined by the free energy. Finally we discuss cooling by reservoir with an initially microcanonic state and show that although a purely microcanonic state can yield the zero temperature, the unattainability is recovered when taking into account imperfections in preparing the microcanonic state.

Web DOI [BibTex]

Web DOI [BibTex]


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GLIDE: GPU-Based Linear Regression for Detection of Epistasis

Kam-Thong, T., Azencott, C., Cayton, L., Pütz, B., Altmann, A., Karbalai, N., Sämann, P., Schölkopf, B., Müller-Myhsok, B., Borgwardt, K.

Human Heredity, 73(4):220-236, September 2012 (article)

Abstract
Due to recent advances in genotyping technologies, mapping phenotypes to single loci in the genome has become a standard technique in statistical genetics. However, one-locus mapping fails to explain much of the phenotypic variance in complex traits. Here, we present GLIDE, which maps phenotypes to pairs of genetic loci and systematically searches for the epistatic interactions expected to reveal part of this missing heritability. GLIDE makes use of the computational power of consumer-grade graphics cards to detect such interactions via linear regression. This enabled us to conduct a systematic two-locus mapping study on seven disease data sets from the Wellcome Trust Case Control Consortium and on in-house hippocampal volume data in 6 h per data set, while current single CPU-based approaches require more than a year’s time to complete the same task.

Web [BibTex]

Web [BibTex]


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Fast projection onto mixed-norm balls with applications

Sra, S.

Minining and Knowledge Discovery (DMKD), 25(2):358-377, September 2012 (article)

DOI [BibTex]

DOI [BibTex]


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Bayesian estimation of free energies from equilibrium simulations

Habeck, M.

Physical Review Letters, 109(10):5, September 2012 (article)

Abstract
Free energy calculations are an important tool in statistical physics and biomolecular simulation. This Letter outlines a Bayesian method to estimate free energies from equilibrium Monte Carlo simulations. A Gibbs sampler is developed that allows efficient sampling of free energies and the density of states. The Gibbs sampling output can be used to estimate expected free energy differences and their uncertainties. The probabilistic formulation offers a unifying framework for existing methods such as the weighted histogram analysis method and the multistate Bennett acceptance ratio; both are shown to be approximate versions of the full probabilistic treatment.

Web DOI [BibTex]

Web DOI [BibTex]


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Influence Maximization in Continuous Time Diffusion Networks

Gomez Rodriguez, M., Schölkopf, B.

In Proceedings of the 29th International Conference on Machine Learning, pages: 313-320, (Editors: J, Langford and J, Pineau), Omnipress, New York, NY, USA, ICML, July 2012 (inproceedings)

Web [BibTex]

Web [BibTex]


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Submodular Inference of Diffusion Networks from Multiple Trees

Gomez Rodriguez, M., Schölkopf, B.

In Proceedings of the 29th International Conference on Machine Learning , pages: 489-496, (Editors: J Langford, and J Pineau), Omnipress, New York, NY, USA, ICML, July 2012 (inproceedings)

Web [BibTex]

Web [BibTex]


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Quasi-Newton Methods: A New Direction

Hennig, P., Kiefel, M.

In Proceedings of the 29th International Conference on Machine Learning, pages: 25-32, ICML ’12, (Editors: John Langford and Joelle Pineau), Omnipress, New York, NY, USA, ICML, July 2012 (inproceedings)

Abstract
Four decades after their invention, quasi- Newton methods are still state of the art in unconstrained numerical optimization. Although not usually interpreted thus, these are learning algorithms that fit a local quadratic approximation to the objective function. We show that many, including the most popular, quasi-Newton methods can be interpreted as approximations of Bayesian linear regression under varying prior assumptions. This new notion elucidates some shortcomings of classical algorithms, and lights the way to a novel nonparametric quasi-Newton method, which is able to make more efficient use of available information at computational cost similar to its predecessors.

website+code pdf link (url) [BibTex]

website+code pdf link (url) [BibTex]


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Image denoising: Can plain Neural Networks compete with BM3D?

Burger, H., Schuler, C., Harmeling, S.

In pages: 2392 - 2399, 25th IEEE Conference on Computer Vision and Pattern Recognition (CVPR), June 2012 (inproceedings)

Abstract
Image denoising can be described as the problem of mapping from a noisy image to a noise-free image. The best currently available denoising methods approximate this mapping with cleverly engineered algorithms. In this work we attempt to learn this mapping directly with a plain multi layer perceptron (MLP) applied to image patches. While this has been done before, we will show that by training on large image databases we are able to compete with the current state-of-the-art image denoising methods. Furthermore, our approach is easily adapted to less extensively studied types of noise (by merely exchanging the training data), for which we achieve excellent results as well.

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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PAC-Bayesian Inequalities for Martingales

Seldin, Y., Laviolette, F., Cesa-Bianchi, N., Shawe-Taylor, J., Auer, P.

IEEE Transactions on Information Theory, 58(12):7086-7093, June 2012 (article)

Abstract
We present a set of high-probability inequalities that control the concentration of weighted averages of multiple (possibly uncountably many) simultaneously evolving and interdependent martingales. We also present a comparison inequality that bounds expectation of a convex function of martingale difference type variables by expectation of the same function of independent Bernoulli variables. This inequality is applied to derive a tighter analog of Hoeffding-Azuma inequality.

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Climate classifications: the value of unsupervised clustering

Zscheischler, J., Mahecha, M., Harmeling, S.

In Proceedings of the International Conference on Computational Science , 9, pages: 897-906, Procedia Computer Science, (Editors: H. Ali, Y. Shi, D. Khazanchi, M. Lees, G.D. van Albada, J. Dongarra, P.M.A. Sloot, J. Dongarra), Elsevier, Amsterdam, Netherlands, ICCS, June 2012 (inproceedings)

Abstract
Classifying the land surface according to di erent climate zones is often a prerequisite for global diagnostic or predictive modelling studies. Classical classifications such as the prominent K¨oppen–Geiger (KG) approach rely on heuristic decision rules. Although these heuristics may transport some process understanding, such a discretization may appear “arbitrary” from a data oriented perspective. In this contribution we compare the precision of a KG classification to an unsupervised classification (k-means clustering). Generally speaking, we revisit the problem of “climate classification” by investigating the inherent patterns in multiple data streams in a purely data driven way. One question is whether we can reproduce the KG boundaries by exploring di erent combinations of climate and remotely sensed vegetation variables. In this context we also investigate whether climate and vegetation variables build similar clusters. In terms of statistical performances, k-means clearly outperforms classical climate classifications. However, a subsequent stability analysis only reveals a meaningful number of clusters if both climate and vegetation data are considered in the analysis. This is a setback for the hope to explain vegetation by means of climate alone. Clearly, classification schemes like K¨oppen-Geiger will play an important role in the future. However, future developments in this area need to be assessed based on data driven approaches.

Web DOI [BibTex]

Web DOI [BibTex]


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Entropy Search for Information-Efficient Global Optimization

Hennig, P., Schuler, C.

Journal of Machine Learning Research, 13, pages: 1809-1837, -, June 2012 (article)

Abstract
Contemporary global optimization algorithms are based on local measures of utility, rather than a probability measure over location and value of the optimum. They thus attempt to collect low function values, not to learn about the optimum. The reason for the absence of probabilistic global optimizers is that the corresponding inference problem is intractable in several ways. This paper develops desiderata for probabilistic optimization algorithms, then presents a concrete algorithm which addresses each of the computational intractabilities with a sequence of approximations and explicitly adresses the decision problem of maximizing information gain from each evaluation.

PDF Web Project Page [BibTex]

PDF Web Project Page [BibTex]


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Kernels for identifying patterns in datasets containing noise or transformation invariances

Schölkopf, B., Chapelle, C.

United States Patent, No. 8209269, June 2012 (patent)

[BibTex]


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A Neuromorphic Architecture for Object Recognition and Motion Anticipation Using Burst-STDP

Nere, A., Olcese, U., Balduzzi, D., Tononi, G.

PLoS ONE, 7(5):17, May 2012 (article)

Abstract
In this work we investigate the possibilities offered by a minimal framework of artificial spiking neurons to be deployed in silico. Here we introduce a hierarchical network architecture of spiking neurons which learns to recognize moving objects in a visual environment and determine the correct motor output for each object. These tasks are learned through both supervised and unsupervised spike timing dependent plasticity (STDP). STDP is responsible for the strengthening (or weakening) of synapses in relation to pre- and post-synaptic spike times and has been described as a Hebbian paradigm taking place both in vitro and in vivo. We utilize a variation of STDP learning, called burst-STDP, which is based on the notion that, since spikes are expensive in terms of energy consumption, then strong bursting activity carries more information than single (sparse) spikes. Furthermore, this learning algorithm takes advantage of homeostatic renormalization, which has been hypothesized to promote memory consolidation during NREM sleep. Using this learning rule, we design a spiking neural network architecture capable of object recognition, motion detection, attention towards important objects, and motor control outputs. We demonstrate the abilities of our design in a simple environment with distractor objects, multiple objects moving concurrently, and in the presence of noise. Most importantly, we show how this neural network is capable of performing these tasks using a simple leaky-integrate-and-fire (LIF) neuron model with binary synapses, making it fully compatible with state-of-the-art digital neuromorphic hardware designs. As such, the building blocks and learning rules presented in this paper appear promising for scalable fully neuromorphic systems to be implemented in hardware chips.

PDF Web DOI [BibTex]


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Simultaneous small animal PET/MR in activated and resting state reveals multiple brain networks

Wehrl, H., Lankes, K., Hossain, M., Bezrukov, I., Liu, C., Martirosian, P., Schick, F., Pichler, B.

20th Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), May 2012 (talk)

Web [BibTex]

Web [BibTex]


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Online Kernel-based Learning for Task-Space Tracking Robot Control

Nguyen-Tuong, D., Peters, J.

IEEE Transactions on Neural Networks and Learning Systems, 23(9):1417-1425, May 2012 (article)

Abstract
Abstract—Task-space control of redundant robot systems based on analytical models is known to be susceptive to modeling errors. Here, data driven model learning methods may present an interesting alternative approach. However, learning models for task-space tracking control from sampled data is an illposed problem. In particular, the same input data point can yield many different output values, which can form a non-convex solution space. Because the problem is ill-posed, models cannot be learned from such data using common regression methods. While learning of task-space control mappings is globally illposed, it has been shown in recent work that it is locally a well-defined problem. In this paper, we use this insight to formulate a local, kernel-based learning approach for online model learning for task-space tracking control. We propose a parametrization for the local model which makes an application in task-space tracking control of redundant robots possible. The model parametrization further allows us to apply the kerneltrick and, therefore, enables a formulation within the kernel learning framework. For evaluations, we show the ability of the method for online model learning for task-space tracking control of redundant robots.

PDF DOI [BibTex]

PDF DOI [BibTex]


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Blind Retrospective Motion Correction of MR Images

Loktyushin, A., Nickisch, H., Pohmann, R., Schölkopf, B.

20th Annual Scientific Meeting ISMRM, May 2012 (poster)

Abstract
Patient motion in the scanner is one of the most challenging problems in MRI. We propose a new retrospective motion correction method for which no tracking devices or specialized sequences are required. We seek the motion parameters such that the image gradients in the spatial domain become sparse. We then use these parameters to invert the motion and recover the sharp image. In our experiments we acquired 2D TSE images and 3D FLASH/MPRAGE volumes of the human head. Major quality improvements are possible in the 2D case and substantial improvements in the 3D case.

Web [BibTex]

Web [BibTex]


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Information-geometric approach to inferring causal directions

Janzing, D., Mooij, J., Zhang, K., Lemeire, J., Zscheischler, J., Daniušis, P., Steudel, B., Schölkopf, B.

Artificial Intelligence, 182-183, pages: 1-31, May 2012 (article)

Abstract
While conventional approaches to causal inference are mainly based on conditional (in)dependences, recent methods also account for the shape of (conditional) distributions. The idea is that the causal hypothesis “X causes Y” imposes that the marginal distribution PX and the conditional distribution PY|X represent independent mechanisms of nature. Recently it has been postulated that the shortest description of the joint distribution PX,Y should therefore be given by separate descriptions of PX and PY|X. Since description length in the sense of Kolmogorov complexity is uncomputable, practical implementations rely on other notions of independence. Here we define independence via orthogonality in information space. This way, we can explicitly describe the kind of dependence that occurs between PY and PX|Y making the causal hypothesis “Y causes X” implausible. Remarkably, this asymmetry between cause and effect becomes particularly simple if X and Y are deterministically related. We present an inference method that works in this case. We also discuss some theoretical results for the non-deterministic case although it is not clear how to employ them for a more general inference method.

Web DOI [BibTex]

Web DOI [BibTex]


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A new PET insert for simultaneous PET/MR small animal imaging

Wehrl, H., Lankes, K., Hossain, M., Bezrukov, I., Liu, C., Martirosian, P., Reischl, G., Schick, F., Pichler, B.

20th Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), May 2012 (talk)

Web [BibTex]

Web [BibTex]


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Sparse regularized regression identifies behaviorally-relevant stimulus features from psychophysical data

Schönfelder, V., Wichmann, F.

Journal of the Acoustical Society of America, 131(5):3953-3969, May 2012 (article)

Abstract
As a prerequisite to quantitative psychophysical models of sensory processing it is necessary to learn to what extent decisions in behavioral tasks depend on specific stimulus features, the perceptual cues. Based on relative linear combination weights, this study demonstrates how stimulus-response data can be analyzed in this regard relying on an L1-regularized multiple logistic regression, a modern statistical procedure developed in machine learning. This method prevents complex models from over-fitting to noisy data. In addition, it enforces “sparse” solutions, a computational approximation to the postulate that a good model should contain the minimal set of predictors necessary to explain the data. In simulations, behavioral data from a classical auditory tone-in-noise detection task were generated. The proposed method is shown to precisely identify observer cues from a large set of covarying, interdependent stimulus features—a setting where standard correlational and regression methods fail. The proposed method succeeds for a wide range of signal-to-noise ratios and for deterministic as well as probabilistic observers. Furthermore, the detailed decision rules of the simulated observers were reconstructed from the estimated linear model weights allowing predictions of responses on the basis of individual stimuli.

Web DOI [BibTex]

Web DOI [BibTex]