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2006


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Generalized Nonnegative Matrix Approximations with Bregman Divergences

Dhillon, I., Sra, S.

In Advances in neural information processing systems 18, pages: 283-290, (Editors: Weiss, Y. , B. Schölkopf, J. Platt), MIT Press, Cambridge, MA, USA, Nineteenth Annual Conference on Neural Information Processing Systems (NIPS), May 2006 (inproceedings)

Abstract
Nonnegative matrix approximation (NNMA) is a recent technique for dimensionality reduction and data analysis that yields a parts based, sparse nonnegative representation for nonnegative input data. NNMA has found a wide variety of applications, including text analysis, document clustering, face/image recognition, language modeling, speech processing and many others. Despite these numerous applications, the algorithmic development for computing the NNMA factors has been relatively efficient. This paper makes algorithmic progress by modeling and solving (using multiplicative updates) new generalized NNMA problems that minimize Bregman divergences between the input matrix and its lowrank approximation. The multiplicative update formulae in the pioneering work by Lee and Seung [11] arise as a special case of our algorithms. In addition, the paper shows how to use penalty functions for incorporating constraints other than nonnegativity into the problem. Further, some interesting extensions to the use of "link" functions for modeling nonlinear relationships are also discussed.

PDF Web [BibTex]

2006

PDF Web [BibTex]


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Fast Gaussian Process Regression using KD-Trees

Shen, Y., Ng, A., Seeger, M.

In Advances in neural information processing systems 18, pages: 1225-1232, (Editors: Weiss, Y. , B. Schölkopf, J. Platt), MIT Press, Cambridge, MA, USA, Nineteenth Annual Conference on Neural Information Processing Systems (NIPS), May 2006 (inproceedings)

Abstract
The computation required for Gaussian process regression with n training examples is about O(n3) during training and O(n) for each prediction. This makes Gaussian process regression too slow for large datasets. In this paper, we present a fast approximation method, based on kd-trees, that significantly reduces both the prediction and the training times of Gaussian process regression.

PDF Web [BibTex]

PDF Web [BibTex]


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Worst-Case Bounds for Gaussian Process Models

Kakade, S., Seeger, M., Foster, D.

In Advances in neural information processing systems 18, pages: 619-626, (Editors: Weiss, Y. , B. Schölkopf, J. Platt), MIT Press, Cambridge, MA, USA, Nineteenth Annual Conference on Neural Information Processing Systems (NIPS), May 2006 (inproceedings)

Abstract
We present a competitive analysis of some non-parametric Bayesian algorithms in a worst-case online learning setting, where no probabilistic assumptions about the generation of the data are made. We consider models which use a Gaussian process prior (over the space of all functions) and provide bounds on the regret (under the log loss) for commonly used non-parametric Bayesian algorithms - including Gaussian regression and logistic regression - which show how these algorithms can perform favorably under rather general conditions. These bounds explicitly handle the infinite dimensionality of these non-parametric classes in a natural way. We also make formal connections to the minimax and emph{minimum description length} (MDL) framework. Here, we show precisely how Bayesian Gaussian regression is a minimax strategy.

PDF Web [BibTex]

PDF Web [BibTex]


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Row-Action Methods for Compressed Sensing

Sra, S., Tropp, J.

In ICASSP 2006, pages: 868-871, IEEE Operations Center, Piscataway, NJ, USA, IEEE International Conference on Acoustics, Speech and Signal Processing, May 2006 (inproceedings)

Abstract
Compressed Sensing uses a small number of random, linear measurements to acquire a sparse signal. Nonlinear algorithms, such as l1 minimization, are used to reconstruct the signal from the measured data. This paper proposes rowaction methods as a computational approach to solving the l1 optimization problem. This paper presents a specific rowaction method and provides extensive empirical evidence that it is an effective technique for signal reconstruction. This approach offers several advantages over interior-point methods, including minimal storage and computational requirements, scalability, and robustness.

Web DOI [BibTex]

Web DOI [BibTex]


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Learning an Interest Operator from Human Eye Movements

Kienzle, W., Wichmann, F., Schölkopf, B., Franz, M.

In CVPWR 2006, pages: page 24, (Editors: C Schmid and S Soatto and C Tomasi), IEEE Computer Society, Los Alamitos, CA, USA, 2006 Conference on Computer Vision and Pattern Recognition Workshop, April 2006 (inproceedings)

Abstract
We present an approach for designing interest operators that are based on human eye movement statistics. In contrast to existing methods which use hand-crafted saliency measures, we use machine learning methods to infer an interest operator directly from eye movement data. That way, the operator provides a measure of biologically plausible interestingness. We describe the data collection, training, and evaluation process, and show that our learned saliency measure significantly accounts for human eye movements. Furthermore, we illustrate connections to existing interest operators, and present a multi-scale interest point detector based on the learned function.

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Evaluating Predictive Uncertainty Challenge

Quinonero Candela, J., Rasmussen, C., Sinz, F., Bousquet, O., Schölkopf, B.

In Machine Learning Challenges: Evaluating Predictive Uncertainty, Visual Object Classification, and Recognising Tectual Entailment, pages: 1-27, (Editors: J Quiñonero Candela and I Dagan and B Magnini and F d’Alché-Buc), Springer, Berlin, Germany, First PASCAL Machine Learning Challenges Workshop (MLCW), April 2006 (inproceedings)

Abstract
This Chapter presents the PASCAL Evaluating Predictive Uncertainty Challenge, introduces the contributed Chapters by the participants who obtained outstanding results, and provides a discussion with some lessons to be learnt. The Challenge was set up to evaluate the ability of Machine Learning algorithms to provide good “probabilistic predictions”, rather than just the usual “point predictions” with no measure of uncertainty, in regression and classification problems. Parti-cipants had to compete on a number of regression and classification tasks, and were evaluated by both traditional losses that only take into account point predictions and losses we proposed that evaluate the quality of the probabilistic predictions.

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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An Inventory of Sequence Polymorphisms For Arabidopsis

Clark, R., Ossowski, S., Schweikert, G., Rätsch, G., Shinn, P., Zeller, G., Warthmann, N., Fu, G., Hinds, D., Chen, H., Frazer, K., Huson, D., Schölkopf, B., Nordborg, M., Ecker, J., Weigel, D.

17th International Conference on Arabidopsis Research, April 2006 (talk)

Abstract
We have used high-density oligonucleotide arrays to characterize common sequence variation in 20 wild strains of Arabidopsis thaliana that were chosen for maximal genetic diversity. Both strands of each possible SNP of the 119 Mb reference genome were represented on the arrays, which were hybridized with whole genome, isothermally amplified DNA to minimize ascertainment biases. Using two complementary approaches, a model based algorithm, and a newly developed machine learning method, we identified over 550,000 SNPs with a false discovery rate of ~ 0.03 (average of 1 SNP for every 216 bp of the genome). A heuristic algorithm predicted in addition ~700 highly polymorphic or deleted regions per accession. Over 700 predicted polymorphisms with major functional effects (e.g., premature stop codons, or deletions of coding sequence) were validated by dideoxy sequencing. Using this data set, we provide the first systematic description of the types of genes that harbor major effect polymorphisms in natural populations at moderate allele frequencies. The data also provide an unprecedented resource for the study of genetic variation in an experimentally tractable, multicellular model organism.

[BibTex]

[BibTex]


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Estimating Predictive Variances with Kernel Ridge Regression

Cawley, G., Talbot, N., Chapelle, O.

In MLCW 2005, pages: 56-77, (Editors: Quinonero-Candela, J. , I. Dagan, B. Magnini, F. D‘Alché-Buc), Springer, Berlin, Germany, First PASCAL Machine Learning Challenges Workshop, April 2006 (inproceedings)

Abstract
In many regression tasks, in addition to an accurate estimate of the conditional mean of the target distribution, an indication of the predictive uncertainty is also required. There are two principal sources of this uncertainty: the noise process contaminating the data and the uncertainty in estimating the model parameters based on a limited sample of training data. Both of them can be summarised in the predictive variance which can then be used to give confidence intervals. In this paper, we present various schemes for providing predictive variances for kernel ridge regression, especially in the case of a heteroscedastic regression, where the variance of the noise process contaminating the data is a smooth function of the explanatory variables. The use of leave-one-out cross-validation is shown to eliminate the bias inherent in estimates of the predictive variance. Results obtained on all three regression tasks comprising the predictive uncertainty challenge demonstrate the value of this approach.

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Machine Learning and Applications in Biology

Shin, H.

6th Course in Bioinformatics for Molecular Biologist, March 2006 (talk)

Abstract
The emergence of the fields of computational biology and bioinformatics has alleviated the burden of solving many biological problems, saving the time and cost required for experiments and also providing predictions that guide new experiments. Within computational biology, machine learning algorithms have played a central role in dealing with the flood of biological data. The goal of this tutorial is to raise awareness and comprehension of machine learning so that biologists can properly match the task at hand to the corresponding analytical approach. We start by categorizing biological problem settings and introduce the general machine learning schemes that fit best to each or these categories. We then explore representative models in further detail, from traditional statistical models to recent kernel models, presenting several up-to-date research projects in bioinfomatics to exemplify how biological questions can benefit from a machine learning approach. Finally, we discuss how cooperation between biologists and machine learners might be made smoother.

PDF [BibTex]

PDF [BibTex]


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ICA by PCA Approach: Relating Higher-Order Statistics to Second-Order Moments

Zhang, K., Chan, L.

In Independent Component Analysis and Blind Signal Separation, pages: 311-318, (Editors: J P Rosca and D Erdogmus and J C Príncipe and S Haykin), Springer, 6th International Conference on Independent Component Analysis and Blind Signal Separation (ICA), March 2006, Series: Lecture Notes in Computer Science, Vol. 3889 (inproceedings)

Web [BibTex]

Web [BibTex]


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Machine Learning Methods For Estimating Operator Equations

Steinke, F., Schölkopf, B.

In Proceedings of the 14th IFAC Symposium on System Identification (SYSID 2006), pages: 6, (Editors: B Ninness and H Hjalmarsson), Elsevier, Oxford, United Kingdom, 14th IFAC Symposium on System Identification (SYSID), March 2006 (inproceedings)

Abstract
We consider the problem of fitting a linear operator induced equation to point sampled data. In order to do so we systematically exploit the duality between minimizing a regularization functional derived from an operator and kernel regression methods. Standard machine learning model selection algorithms can then be interpreted as a search of the equation best fitting given data points. For many kernels this operator induced equation is a linear differential equation. Thus, we link a continuous-time system identification task with common machine learning methods. The presented link opens up a wide variety of methods to be applied to this system identification problem. In a series of experiments we demonstrate an example algorithm working on non-uniformly spaced data, giving special focus to the problem of identifying one system from multiple data recordings.

PDF Web [BibTex]

PDF Web [BibTex]


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Implicit Volterra and Wiener Series for Higher-Order Image Analysis

Franz, M., Schölkopf, B.

In Advances in Data Analysis: Proceedings of the 30th Annual Conference of The Gesellschaft für Klassifikation, 30, pages: 1, March 2006 (inproceedings)

Abstract
The computation of classical higher-order statistics such as higher-order moments or spectra is difficult for images due to the huge number of terms to be estimated and interpreted. We propose an alternative approach in which multiplicative pixel interactions are described by a series of Wiener functionals. Since the functionals are estimated implicitly via polynomial kernels, the combinatorial explosion associated with the classical higher-order statistics is avoided. In addition, the kernel framework allows for estimating infinite series expansions and for the regularized estimation of the Wiener series. First results show that image structures such as lines or corners can be predicted correctly, and that pixel interactions up to the order of five play an important role in natural images.

PDF [BibTex]

PDF [BibTex]


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Class prediction from time series gene expression profiles using dynamical systems kernels

Borgwardt, KM., Vishwanathan, SVN., Kriegel, H-P.

In pages: 547-558, (Editors: Altman, R.B. A.K. Dunker, L. Hunter, T. Murray, T.E. Klein), World Scientific, Singapore, Pacific Symposium on Biocomputing (PSB), January 2006 (inproceedings)

Abstract
We present a kernel-based approach to the classification of time series of gene expression profiles. Our method takes into account the dynamic evolution over time as well as the temporal characteristics of the data. More specifically, we model the evolution of the gene expression profiles as a Linear Time Invariant (LTI) dynamical system and estimate its model parameters. A kernel on dynamical systems is then used to classify these time series. We successfully test our approach on a published dataset to predict response to drug therapy in Multiple Sclerosis patients. For pharmacogenomics, our method offers a huge potential for advanced computational tools in disease diagnosis, and disease and drug therapy outcome prognosis.

PDF Web [BibTex]

PDF Web [BibTex]


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Causal Inference by Choosing Graphs with Most Plausible Markov Kernels

Sun, X., Janzing, D., Schölkopf, B.

In Proceedings of the 9th International Symposium on Artificial Intelligence and Mathematics, pages: 1-11, ISAIM, January 2006 (inproceedings)

Abstract
We propose a new inference rule for estimating causal structure that underlies the observed statistical dependencies among n random variables. Our method is based on comparing the conditional distributions of variables given their direct causes (the so-called Markov kernels") for all hypothetical causal directions and choosing the most plausible one. We consider those Markov kernels most plausible, which maximize the (conditional) entropies constrained by their observed first moment (expectation) and second moments (variance and covariance with its direct causes) based on their given domain. In this paper, we discuss our inference rule for causal relationships between two variables in detail, apply it to a real-world temperature data set with known causality and show that our method provides a correct result for the example.

PDF Web [BibTex]

PDF Web [BibTex]


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Extensions of ICA for Causality Discovery in the Hong Kong Stock Market

Zhang, K., Chan, L.

In Neural Information Processing, 13th International Conference, ICONIP 2006, pages: 400-409, (Editors: I King and J Wang and L Chan and D L Wang), Springer, 13th International Conference on Neural Information Processing (ICONIP), 2006, Lecture Notes in Computer Science, 2006, Volume 4234/2006 (inproceedings)

Web DOI [BibTex]

Web DOI [BibTex]


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Enhancement of source independence for blind source separation

Zhang, K., Chan, L.

In Independent Component Analysis and Blind Signal Separation, LNCS 3889, pages: 731-738, (Editors: J. Rosca and D. Erdogmus and JC Príncipe und S. Haykin), Springer, Berlin, Germany, 6th International Conference on Independent Component Analysis and Blind Signal Separation (ICA), 2006, Lecture Notes in Computer Science, 2006, Volume 3889/2006 (inproceedings)

Web DOI [BibTex]

Web DOI [BibTex]


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ICA with Sparse Connections

Zhang, K., Chan, L.

In Intelligent Data Engineering and Automated Learning – IDEAL 2006, pages: 530-537, (Editors: E Corchado and H Yin and V Botti und Colin Fyfe), Springer, 7th International Conference on Intelligent Data Engineering and Automated Learning (IDEAL), 2006, Lecture Notes in Computer Science, 2006, Volume 4224/2006 (inproceedings)

Web DOI [BibTex]

Web DOI [BibTex]


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How to choose the covariance for Gaussian process regression independently of the basis

Franz, M., Gehler, P.

In Proceedings of the Workshop Gaussian Processes in Practice, Workshop Gaussian Processes in Practice (GPIP), 2006 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Learning operational space control

Peters, J., Schaal, S.

In Robotics: Science and Systems II (RSS 2006), pages: 255-262, (Editors: Gaurav S. Sukhatme and Stefan Schaal and Wolfram Burgard and Dieter Fox), Cambridge, MA: MIT Press, RSS , 2006, clmc (inproceedings)

Abstract
While operational space control is of essential importance for robotics and well-understood from an analytical point of view, it can be prohibitively hard to achieve accurate control in face of modeling errors, which are inevitable in complex robots, e.g., humanoid robots. In such cases, learning control methods can offer an interesting alternative to analytical control algorithms. However, the resulting learning problem is ill-defined as it requires to learn an inverse mapping of a usually redundant system, which is well known to suffer from the property of non-covexity of the solution space, i.e., the learning system could generate motor commands that try to steer the robot into physically impossible configurations. A first important insight for this paper is that, nevertheless, a physically correct solution to the inverse problem does exits when learning of the inverse map is performed in a suitable piecewise linear way. The second crucial component for our work is based on a recent insight that many operational space controllers can be understood in terms of a constraint optimal control problem. The cost function associated with this optimal control problem allows us to formulate a learning algorithm that automatically synthesizes a globally consistent desired resolution of redundancy while learning the operational space controller. From the view of machine learning, the learning problem corresponds to a reinforcement learning problem that maximizes an immediate reward and that employs an expectation-maximization policy search algorithm. Evaluations on a three degrees of freedom robot arm illustrate the feasability of our suggested approach.

link (url) [BibTex]

link (url) [BibTex]


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Reinforcement Learning for Parameterized Motor Primitives

Peters, J., Schaal, S.

In Proceedings of the 2006 International Joint Conference on Neural Networks, pages: 73-80, IJCNN, 2006, clmc (inproceedings)

Abstract
One of the major challenges in both action generation for robotics and in the understanding of human motor control is to learn the "building blocks of movement generation", called motor primitives. Motor primitives, as used in this paper, are parameterized control policies such as splines or nonlinear differential equations with desired attractor properties. While a lot of progress has been made in teaching parameterized motor primitives using supervised or imitation learning, the self-improvement by interaction of the system with the environment remains a challenging problem. In this paper, we evaluate different reinforcement learning approaches for improving the performance of parameterized motor primitives. For pursuing this goal, we highlight the difficulties with current reinforcement learning methods, and outline both established and novel algorithms for the gradient-based improvement of parameterized policies. We compare these algorithms in the context of motor primitive learning, and show that our most modern algorithm, the Episodic Natural Actor-Critic outperforms previous algorithms by at least an order of magnitude. We demonstrate the efficiency of this reinforcement learning method in the application of learning to hit a baseball with an anthropomorphic robot arm.

link (url) DOI [BibTex]

link (url) DOI [BibTex]


The rate adapting poisson model for information retrieval and object recognition
The rate adapting poisson model for information retrieval and object recognition

Gehler, P. V., Holub, A. D., Welling, M.

In Proceedings of the 23rd international conference on Machine learning, pages: 337-344, ICML ’06, ACM, New York, NY, USA, 2006 (inproceedings)

project page pdf DOI [BibTex]

project page pdf DOI [BibTex]


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Policy gradient methods for robotics

Peters, J., Schaal, S.

In Proceedings of the IEEE International Conference on Intelligent Robotics Systems, pages: 2219-2225, IROS, 2006, clmc (inproceedings)

Abstract
The aquisition and improvement of motor skills and control policies for robotics from trial and error is of essential importance if robots should ever leave precisely pre-structured environments. However, to date only few existing reinforcement learning methods have been scaled into the domains of highdimensional robots such as manipulator, legged or humanoid robots. Policy gradient methods remain one of the few exceptions and have found a variety of applications. Nevertheless, the application of such methods is not without peril if done in an uninformed manner. In this paper, we give an overview on learning with policy gradient methods for robotics with a strong focus on recent advances in the field. We outline previous applications to robotics and show how the most recently developed methods can significantly improve learning performance. Finally, we evaluate our most promising algorithm in the application of hitting a baseball with an anthropomorphic arm.

link (url) DOI [BibTex]

link (url) DOI [BibTex]

2005


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Spectral clustering and transductive inference for graph data

Zhou, D.

NIPS Workshop on Kernel Methods and Structured Domains, December 2005 (talk)

PDF Web [BibTex]

2005

PDF Web [BibTex]


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Kernel ICA for Large Scale Problems

Jegelka, S., Gretton, A., Achlioptas, D.

In pages: -, NIPS Workshop on Large Scale Kernel Machines, December 2005 (inproceedings)

Web [BibTex]

Web [BibTex]


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Infinite dimensional exponential families by reproducing kernel Hilbert spaces

Fukumizu, K.

In IGAIA 2005, pages: 324-333, 2nd International Symposium on Information Geometry and its Applications, December 2005 (inproceedings)

Abstract
The purpose of this paper is to propose a method of constructing exponential families of Hilbert manifold, on which estimation theory can be built. Although there have been works on infinite dimensional exponential families of Banach manifolds (Pistone and Sempi, 1995; Gibilisco and Pistone, 1998; Pistone and Rogantin, 1999), they are not appropriate to discuss statistical estimation with finite number of samples; the likelihood function with finite samples is not continuous on the manifold. In this paper we use a reproducing kernel Hilbert space as a functional space for constructing an exponential manifold. A reproducing kernel Hilbert space is dened as a Hilbert space of functions such that evaluation of a function at an arbitrary point is a continuous functional on the Hilbert space. Since we can discuss the value of a function with this space, it is very natural to use a manifold associated with a reproducing kernel Hilbert space as a basis of estimation theory. We focus on the maximum likelihood estimation (MLE) with the exponential manifold of a reproducing kernel Hilbert space. As in many non-parametric estimation methods, straightforward extension of MLE to an infinite dimensional exponential manifold suffers the problem of ill-posedness caused by the fact that the estimator should be chosen from the infinite dimensional space with only finite number of constraints given by the data. To solve this problem, a pseudo-maximum likelihood method is proposed by restricting the infinite dimensional manifold to a series of finite dimensional submanifolds, which enlarge as the number of samples increases. Some asymptotic results in the limit of infinite samples are shown, including the consistency of the pseudo-MLE.

PDF Web [BibTex]

PDF Web [BibTex]


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Some thoughts about Gaussian Processes

Chapelle, O.

NIPS Workshop on Open Problems in Gaussian Processes for Machine Learning, December 2005 (talk)

PDF Web [BibTex]

PDF Web [BibTex]


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Shortest-path kernels on graphs

Borgwardt, KM., Kriegel, H-P.

In pages: 74-81, IEEE Computer Society, Los Alamitos, CA, USA, Fifth International Conference on Data Mining (ICDM), November 2005 (inproceedings)

Abstract
Data mining algorithms are facing the challenge to deal with an increasing number of complex objects. For graph data, a whole toolbox of data mining algorithms becomes available by defining a kernel function on instances of graphs. Graph kernels based on walks, subtrees and cycles in graphs have been proposed so far. As a general problem, these kernels are either computationally expensive or limited in their expressiveness. We try to overcome this problem by defining expressive graph kernels which are based on paths. As the computation of all paths and longest paths in a graph is NP-hard, we propose graph kernels based on shortest paths. These kernels are computable in polynomial time, retain expressivity and are still positive definite. In experiments on classification of graph models of proteins, our shortest-path kernels show significantly higher classification accuracy than walk-based kernels.

Web DOI [BibTex]

Web DOI [BibTex]


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Training Support Vector Machines with Multiple Equality Constraints

Kienzle, W., Schölkopf, B.

In Proceedings of the 16th European Conference on Machine Learning, Lecture Notes in Computer Science, Vol. 3720, pages: 182-193, (Editors: JG Carbonell and J Siekmann), Springer, Berlin, Germany, ECML, November 2005 (inproceedings)

Abstract
In this paper we present a primal-dual decomposition algorithm for support vector machine training. As with existing methods that use very small working sets (such as Sequential Minimal Optimization (SMO), Successive Over-Relaxation (SOR) or the Kernel Adatron (KA)), our method scales well, is straightforward to implement, and does not require an external QP solver. Unlike SMO, SOR and KA, the method is applicable to a large number of SVM formulations regardless of the number of equality constraints involved. The effectiveness of our algorithm is demonstrated on a more difficult SVM variant in this respect, namely semi-parametric support vector regression.

PDF DOI [BibTex]

PDF DOI [BibTex]


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Measuring Statistical Dependence with Hilbert-Schmidt Norms

Gretton, A., Bousquet, O., Smola, A., Schoelkopf, B.

In Algorithmic Learning Theory, Lecture Notes in Computer Science, Vol. 3734, pages: 63-78, (Editors: S Jain and H-U Simon and E Tomita), Springer, Berlin, Germany, 16th International Conference ALT, October 2005 (inproceedings)

Abstract
We propose an independence criterion based on the eigenspectrum of covariance operators in reproducing kernel Hilbert spaces (RKHSs), consisting of an empirical estimate of the Hilbert-Schmidt norm of the cross-covariance operator (we term this a Hilbert-Schmidt Independence Criterion, or HSIC). This approach has several advantages, compared with previous kernel-based independence criteria. First, the empirical estimate is simpler than any other kernel dependence test, and requires no user-defined regularisation. Second, there is a clearly defined population quantity which the empirical estimate approaches in the large sample limit, with exponential convergence guaranteed between the two: this ensures that independence tests based on {methodname} do not suffer from slow learning rates. Finally, we show in the context of independent component analysis (ICA) that the performance of HSIC is competitive with that of previously published kernel-based criteria, and of other recently published ICA methods.

PDF DOI [BibTex]

PDF DOI [BibTex]


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An Analysis of the Anti-Learning Phenomenon for the Class Symmetric Polyhedron

Kowalczyk, A., Chapelle, O.

In Algorithmic Learning Theory: 16th International Conference, pages: 78-92, Algorithmic Learning Theory, October 2005 (inproceedings)

Abstract
This paper deals with an unusual phenomenon where most machine learning algorithms yield good performance on the training set but systematically worse than random performance on the test set. This has been observed so far for some natural data sets and demonstrated for some synthetic data sets when the classification rule is learned from a small set of training samples drawn from some high dimensional space. The initial analysis presented in this paper shows that anti-learning is a property of data sets and is quite distinct from overfitting of a training data. Moreover, the analysis leads to a specification of some machine learning procedures which can overcome anti-learning and generate ma- chines able to classify training and test data consistently.

PDF [BibTex]

PDF [BibTex]


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A new methodology for robot controller design

Peters, J., Peters, J., Mistry, M., Udwadia, F.

In Proceedings of the 5th ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference (IDETC‘05), 5, pages: 1067-1076 , ASME, New York, NY, USA, 5th ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference (IDETC-MSNDC), September 2005 (inproceedings)

Abstract
Gauss' principle of least constraint and its generalizations have provided a useful insights for the development of tracking controllers for mechanical systems [1]. Using this concept, we present a novel methodology for the design of a specific class of robot controllers. With our new framework, we demonstrate that well-known and also several novel nonlinear robot control laws can be derived from this generic framework, and show experimental verifications on a Sarcos Master Arm robot for some of these controllers. We believe that the suggested approach unifies and simplifies the design of optimal nonlinear control laws for robots obeying rigid body dynamics equations, both with or without external constraints, holonomic or nonholonomic constraints, with over-actuation or underactuation, as well as open-chain and closed-chain kinematics.

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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EEG-Based Mental Task Classification: Linear and Nonlinear Classification of Movement Imagery

Athena Akrami, A.

In EMBS, 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS), September 1-4,, Shanghai, China (Accepted), September 2005 (inproceedings) Accepted

Abstract
Abstract—Use of EEG signals as a channel of communication between men and machines represents one of the current challenges in signal theory research. The principal element of such a communication system, known as a “Brain-Computer Interface,” is the interpretation of the EEG signals related to the characteristic parameters of brain electrical activity. Our goal in this work was extracting quantitative changes in the EEG due to movement imagination. Subject‘s EEG was recorded while he performed left or right hand movement imagination. Different feature sets extracted from EEG were used as inputs into linear, Neural Network and HMM classifiers for the purpose of imagery movement mental task classification. The results indicate that applying linear classifier to 5 frequency features of asymmetry signal produced from channel C3 and C4 can provide a very high classification accuracy percentage as a simple classifier with small number of features comparing to other feature sets.

[BibTex]

[BibTex]


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Building Sparse Large Margin Classifiers

Wu, M., Schölkopf, B., BakIr, G.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 996-1003, (Editors: L De Raedt and S Wrobel ), ACM, New York, NY, USA, ICML , August 2005 (inproceedings)

Abstract
This paper presents an approach to build Sparse Large Margin Classifiers (SLMC) by adding one more constraint to the standard Support Vector Machine (SVM) training problem. The added constraint explicitly controls the sparseness of the classifier and an approach is provided to solve the formulated problem. When considering the dual of this problem, it can be seen that building an SLMC is equivalent to constructing an SVM with a modified kernel function. Further analysis of this kernel function indicates that the proposed approach essentially finds a discriminating subspace that can be spanned by a small number of vectors, and in this subspace different classes of data are linearly well separated. Experimental results over several classification benchmarks show that in most cases the proposed approach outperforms the state-of-art sparse learning algorithms.

PDF DOI [BibTex]

PDF DOI [BibTex]


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Building Sparse Large Margin Classifiers

Wu, M., Schölkopf, B., BakIr, G.

The 22nd International Conference on Machine Learning (ICML), August 2005 (talk)

PDF [BibTex]

PDF [BibTex]


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Learning from Labeled and Unlabeled Data on a Directed Graph

Zhou, D., Huang, J., Schölkopf, B.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 1041 -1048, (Editors: L De Raedt and S Wrobel), ACM, New York, NY, USA, ICML, August 2005 (inproceedings)

Abstract
We propose a general framework for learning from labeled and unlabeled data on a directed graph in which the structure of the graph including the directionality of the edges is considered. The time complexity of the algorithm derived from this framework is nearly linear due to recently developed numerical techniques. In the absence of labeled instances, this framework can be utilized as a spectral clustering method for directed graphs, which generalizes the spectral clustering approach for undirected graphs. We have applied our framework to real-world web classification problems and obtained encouraging results.

PostScript PDF [BibTex]

PostScript PDF [BibTex]


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Learning from Labeled and Unlabeled Data on a Directed Graph

Zhou, D.

The 22nd International Conference on Machine Learning, August 2005 (talk)

Abstract
We propose a general framework for learning from labeled and unlabeled data on a directed graph in which the structure of the graph including the directionality of the edges is considered. The time complexity of the algorithm derived from this framework is nearly linear due to recently developed numerical techniques. In the absence of labeled instances, this framework can be utilized as a spectral clustering method for directed graphs, which generalizes the spectral clustering approach for undirected graphs. We have applied our framework to real-world web classification problems and obtained encouraging results.

PDF [BibTex]

PDF [BibTex]


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A unifying methodology for the control of robotic systems

Peters, J., Mistry, M., Udwadia, F., Cory, R., Nakanishi, J., Schaal, S.

In Proceedings of the 2005 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2005), pages: 1824-1831, IEEE Operations Center, Piscataway, NJ, USA, 2005 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), August 2005 (inproceedings)

Abstract
Recently, R. E. Udwadia (2003) suggested to derive tracking controllers for mechanical systems using a generalization of Gauss‘ principle of least constraint. This method allows us to reformulate control problems as a special class of optimal control. We take this line of reasoning one step further and demonstrate that well-known and also several novel nonlinear robot control laws can be derived from this generic methodology. We show experimental verifications on a Sarcos Master Arm robot for some of the derived controllers. We believe that the suggested approach offers a promising unification and simplification of nonlinear control law design for robots obeying rigid body dynamics equations, both with or without external constraints, with over-actuation or underactuation, as well as open-chain and closed-chain kinematics.

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Regularization on Discrete Spaces

Zhou, D., Schölkopf, B.

In Pattern Recognition, Lecture Notes in Computer Science, Vol. 3663, pages: 361-368, (Editors: WG Kropatsch and R Sablatnig and A Hanbury), Springer, Berlin, Germany, 27th DAGM Symposium, August 2005 (inproceedings)

Abstract
We consider the classification problem on a finite set of objects. Some of them are labeled, and the task is to predict the labels of the remaining unlabeled ones. Such an estimation problem is generally referred to as transductive inference. It is well-known that many meaningful inductive or supervised methods can be derived from a regularization framework, which minimizes a loss function plus a regularization term. In the same spirit, we propose a general discrete regularization framework defined on finite object sets, which can be thought of as the discrete analogue of classical regularization theory. A family of transductive inference schemes is then systemically derived from the framework, including our earlier algorithm for transductive inference, with which we obtained encouraging results on many practical classification problems. The discrete regularization framework is built on the discrete analysis and geometry developed by ourselves, in which a number of discrete differential operators of various orders are constructed, which can be thought of as the discrete analogue of their counterparts in the continuous case.

PDF PostScript DOI [BibTex]

PDF PostScript DOI [BibTex]


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Large Margin Non-Linear Embedding

Zien, A., Candela, J.

In ICML 2005, pages: 1065-1072, (Editors: De Raedt, L. , S. Wrobel), ACM Press, New York, NY, USA, 22nd International Conference on Machine Learning, August 2005 (inproceedings)

Abstract
It is common in classification methods to first place data in a vector space and then learn decision boundaries. We propose reversing that process: for fixed decision boundaries, we ``learn‘‘ the location of the data. This way we (i) do not need a metric (or even stronger structure) -- pairwise dissimilarities suffice; and additionally (ii) produce low-dimensional embeddings that can be analyzed visually. We achieve this by combining an entropy-based embedding method with an entropy-based version of semi-supervised logistic regression. We present results for clustering and semi-supervised classification.

PDF PostScript Web DOI [BibTex]

PDF PostScript Web DOI [BibTex]


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Face Detection: Efficient and Rank Deficient

Kienzle, W., BakIr, G., Franz, M., Schölkopf, B.

In Advances in Neural Information Processing Systems 17, pages: 673-680, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
This paper proposes a method for computing fast approximations to support vector decision functions in the field of object detection. In the present approach we are building on an existing algorithm where the set of support vectors is replaced by a smaller, so-called reduced set of synthesized input space points. In contrast to the existing method that finds the reduced set via unconstrained optimization, we impose a structural constraint on the synthetic points such that the resulting approximations can be evaluated via separable filters. For applications that require scanning an entire image, this decreases the computational complexity of a scan by a significant amount. We present experimental results on a standard face detection database.

PDF Web [BibTex]

PDF Web [BibTex]


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Triangle Fixing Algorithms for the Metric Nearness Problem

Dhillon, I., Sra, S., Tropp, J.

In Advances in Neural Information Processing Systems 17, pages: 361-368, (Editors: Saul, L.K. , Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
Various problems in machine learning, databases, and statistics involve pairwise distances among a set of objects. It is often desirable for these distances to satisfy the properties of a metric, especially the triangle inequality. Applications where metric data is useful include clustering, classification, metric-based indexing, and approximation algorithms for various graph problems. This paper presents the Metric Nearness Problem: Given a dissimilarity matrix, find the "nearest" matrix of distances that satisfy the triangle inequalities. For lp nearness measures, this paper develops efficient triangle fixing algorithms that compute globally optimal solutions by exploiting the inherent structure of the problem. Empirically, the algorithms have time and storage costs that are linear in the number of triangle constraints. The methods can also be easily parallelized for additional speed.

PDF Web [BibTex]

PDF Web [BibTex]


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Methods Towards Invasive Human Brain Computer Interfaces

Lal, T., Hinterberger, T., Widman, G., Schröder, M., Hill, J., Rosenstiel, W., Elger, C., Schölkopf, B., Birbaumer, N.

In Advances in Neural Information Processing Systems 17, pages: 737-744, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
During the last ten years there has been growing interest in the development of Brain Computer Interfaces (BCIs). The field has mainly been driven by the needs of completely paralyzed patients to communicate. With a few exceptions, most human BCIs are based on extracranial electroencephalography (EEG). However, reported bit rates are still low. One reason for this is the low signal-to-noise ratio of the EEG. We are currently investigating if BCIs based on electrocorticography (ECoG) are a viable alternative. In this paper we present the method and examples of intracranial EEG recordings of three epilepsy patients with electrode grids placed on the motor cortex. The patients were asked to repeatedly imagine movements of two kinds, e.g., tongue or finger movements. We analyze the classifiability of the data using Support Vector Machines (SVMs) and Recursive Channel Elimination (RCE).

PDF Web [BibTex]

PDF Web [BibTex]


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A Machine Learning Approach to Conjoint Analysis

Chapelle, O., Harchaoui, Z.

In Advances in Neural Information Processing Systems 17, pages: 257-264, (Editors: Saul, L.K. , Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
Choice-based conjoint analysis builds models of consumers preferences over products with answers gathered in questionnaires. Our main goal is to bring tools from the machine learning community to solve more efficiently this problem. Thus, we propose two algorithms to estimate quickly and accurately consumer preferences.

PDF Web [BibTex]

PDF Web [BibTex]


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An Auditory Paradigm for Brain-Computer Interfaces

Hill, N., Lal, T., Bierig, K., Birbaumer, N., Schölkopf, B.

In Advances in Neural Information Processing Systems 17, pages: 569-576, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
Motivated by the particular problems involved in communicating with "locked-in" paralysed patients, we aim to develop a brain-computer interface that uses auditory stimuli. We describe a paradigm that allows a user to make a binary decision by focusing attention on one of two concurrent auditory stimulus sequences. Using Support Vector Machine classification and Recursive Channel Elimination on the independent components of averaged event-related potentials, we show that an untrained user's EEG data can be classified with an encouragingly high level of accuracy. This suggests that it is possible for users to modulate EEG signals in a single trial by the conscious direction of attention, well enough to be useful in BCI.

PDF Web [BibTex]

PDF Web [BibTex]


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Matrix Exponential Gradient Updates for On-line Learning and Bregman Projection

Tsuda, K., Rätsch, G., Warmuth, M.

In Advances in Neural Information Processing Systems 17, pages: 1425-1432, (Editors: Saul, L.K. , Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
We address the problem of learning a symmetric positive definite matrix. The central issue is to design parameter updates that preserve positive definiteness. Our updates are motivated with the von Neumann divergence. Rather than treating the most general case, we focus on two key applications that exemplify our methods: On-line learning with a simple square loss and finding a symmetric positive definite matrix subject to symmetric linear constraints. The updates generalize the Exponentiated Gradient (EG) update and AdaBoost, respectively: the parameter is now a symmetric positive definite matrix of trace one instead of a probability vector (which in this context is a diagonal positive definite matrix with trace one). The generalized updates use matrix logarithms and exponentials to preserve positive definiteness. Most importantly, we show how the analysis of each algorithm generalizes to the non-diagonal case. We apply both new algorithms, called the Matrix Exponentiated Gradient (MEG) update and DefiniteBoost, to learn a kernel matrix from distance measurements.

PDF Web [BibTex]

PDF Web [BibTex]


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Machine Learning Applied to Perception: Decision Images for Classification

Wichmann, F., Graf, A., Simoncelli, E., Bülthoff, H., Schölkopf, B.

In Advances in Neural Information Processing Systems 17, pages: 1489-1496, (Editors: LK, Saul and Y, Weiss and L, Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
We study gender discrimination of human faces using a combination of psychophysical classification and discrimination experiments together with methods from machine learning. We reduce the dimensionality of a set of face images using principal component analysis, and then train a set of linear classifiers on this reduced representation (linear support vector machines (SVMs), relevance vector machines (RVMs), Fisher linear discriminant (FLD), and prototype (prot) classifiers) using human classification data. Because we combine a linear preprocessor with linear classifiers, the entire system acts as a linear classifier, allowing us to visualise the decision-image corresponding to the normal vector of the separating hyperplanes (SH) of each classifier. We predict that the female-to-maleness transition along the normal vector for classifiers closely mimicking human classification (SVM and RVM 1) should be faster than the transition along any other direction. A psychophysical discrimination experiment using the decision images as stimuli is consistent with this prediction.

PDF Web [BibTex]

PDF Web [BibTex]


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Breaking SVM Complexity with Cross-Training

Bakir, G., Bottou, L., Weston, J.

In Advances in Neural Information Processing Systems 17, pages: 81-88, (Editors: Saul, L.K. , Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
We propose an algorithm for selectively removing examples from the training set using probabilistic estimates related to editing algorithms (Devijver and Kittler82). The procedure creates a separable distribution of training examples with minimal impact on the decision boundary position. It breaks the linear dependency between the number of SVs and the number of training examples, and sharply reduces the complexity of SVMs during both the training and prediction stages.

PDF Web [BibTex]

PDF Web [BibTex]


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Implicit Wiener series for higher-order image analysis

Franz, M., Schölkopf, B.

In Advances in Neural Information Processing Systems 17, pages: 465-472, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
The computation of classical higher-order statistics such as higher-order moments or spectra is difficult for images due to the huge number of terms to be estimated and interpreted. We propose an alternative approach in which multiplicative pixel interactions are described by a series of Wiener functionals. Since the functionals are estimated implicitly via polynomial kernels, the combinatorial explosion associated with the classical higher-order statistics is avoided. First results show that image structures such as lines or corners can be predicted correctly, and that pixel interactions up to the order of five play an important role in natural images.

PDF Web [BibTex]

PDF Web [BibTex]


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Limits of Spectral Clustering

von Luxburg, U., Bousquet, O., Belkin, M.

In Advances in Neural Information Processing Systems 17, pages: 857-864, (Editors: Saul, L. K., Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
An important aspect of clustering algorithms is whether the partitions constructed on finite samples converge to a useful clustering of the whole data space as the sample size increases. This paper investigates this question for normalized and unnormalized versions of the popular spectral clustering algorithm. Surprisingly, the convergence of unnormalized spectral clustering is more difficult to handle than the normalized case. Even though recently some first results on the convergence of normalized spectral clustering have been obtained, for the unnormalized case we have to develop a completely new approach combining tools from numerical integration, spectral and perturbation theory, and probability. It turns out that while in the normalized case, spectral clustering usually converges to a nice partition of the data space, in the unnormalized case the same only holds under strong additional assumptions which are not always satisfied. We conclude that our analysis gives strong evidence for the superiority of normalized spectral clustering. It also provides a basis for future exploration of other Laplacian-based methods.

PDF Web [BibTex]

PDF Web [BibTex]