618 results
(View BibTeX file of all listed publications)

**Nearest Neighbor Clustering: A Baseline Method for Consistent Clustering with Arbitrary Objective Functions**
*Journal of Machine Learning Research*, 10, pages: 657-698, March 2009 (article)

**Protein Functional Class Prediction With a Combined Graph**
*Expert Systems with Applications*, 36(2):3284-3292, March 2009 (article)

**Gaussian Process Dynamic Programming**
*Neurocomputing*, 72(7-9):1508-1524, March 2009 (article)

**Towards quantitative PET/MRI: a review of MR-based attenuation correction techniques**
*European Journal of Nuclear Medicine and Molecular Imaging*, 36(Supplement 1):93-104, March 2009 (article)

**Generating Spike Trains with Specified Correlation Coefficients**
*Neural Computation*, 21(2):397-423, February 2009 (article)

**Automatic detection of preclinical neurodegeneration: Presymptomatic Huntington disease**
*Neurology*, 72(5):426-431, February 2009 (article)

**Enumeration of condition-dependent dense modules in protein interaction networks**
*Bioinformatics*, 25(7):933-940, February 2009 (article)

**Prototype Classification: Insights from Machine Learning**
*Neural Computation*, 21(1):272-300, January 2009 (article)

**The DICS repository: module-assisted analysis of disease-related gene lists**
*Bioinformatics*, 25(6):830-831, January 2009 (article)

**Large Margin Methods for Part of Speech Tagging**
In *Automatic Speech and Speaker Recognition: Large Margin and Kernel Methods*, pages: 141-160, (Editors: Keshet, J. and Bengio, S.), Wiley, Hoboken, NJ, USA, January 2009 (inbook)

**Motor Control and Learning in Table Tennis**
Eberhard Karls Universität Tübingen, Gerrmany, 2009 (diplomathesis)

**Hierarchical Clustering and Density Estimation Based on k-nearest-neighbor graphs**
Eberhard Karls Universität Tübingen, Germany, 2009 (diplomathesis)

**mGene: accurate SVM-based gene finding with an application to nematode genomes**
*Genome Research*, 19(11):2133-43, 2009 (article)

**Efficient Bregman Range Search**
In *Advances in Neural Information Processing Systems 22*, pages: 243-251, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Learning with Structured Data: Applications to Computer Vision**
Technische Universität Berlin, Germany, 2009 (phdthesis)

**Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases**
*Molecular Cell*, 34(5):580-590, 2009 (article)

**Discussion of: Brownian Distance Covariance**
*The Annals of Applied Statistics*, 3(4):1285-1294, 2009 (article)

**Covariate shift and local learning by distribution matching**
In *Dataset Shift in Machine Learning*, pages: 131-160, (Editors: Quiñonero-Candela, J., Sugiyama, M., Schwaighofer, A. and Lawrence, N. D.), MIT Press, Cambridge, MA, USA, 2009 (inbook)

**Kernel Choice and Classifiability for RKHS Embeddings of Probability Distributions**
In *Advances in Neural Information Processing Systems 22*, pages: 1750-1758, (Editors: Y Bengio and D Schuurmans and J Lafferty and C Williams and A Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Nonlinear directed acyclic structure learning with weakly additive noise models**
In *Advances in Neural Information Processing Systems 22*, pages: 1847-1855, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**From Differential Equations to Differential Geometry: Aspects of Regularisation in Machine Learning**
Universität des Saarlandes, Saarbrücken, Germany, 2009 (phdthesis)

**Graphical models for decoding in BCI visual speller systems**
In pages: 470-473, IEEE, 4th International IEEE EMBS Conference on Neural Engineering (NER), 2009 (inproceedings)

**A Fast, Consistent Kernel Two-Sample Test**
In *Advances in Neural Information Processing Systems 22*, pages: 673-681, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Augmenting Feature-driven fMRI Analyses: Semi-supervised learning and resting state activity**
In *Advances in Neural Information Processing Systems 22*, pages: 126-134, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Non-linear System Identification: Visual Saliency Inferred from Eye-Movement Data**
*Journal of Vision*, 9(8):article 32, 2009 (article)

**mGene.web: a web service for accurate computational gene finding**
*Nucleic Acids Research*, 37, pages: W312-6, 2009 (article)

**Fast subtree kernels on graphs**
In *Advances in Neural Information Processing Systems 22*, pages: 1660-1668, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Conformal Multi-Instance Kernels**
In *NIPS 2006 Workshop on Learning to Compare Examples*, pages: 1-6, NIPS Workshop on Learning to Compare Examples, December 2006 (inproceedings)

**Some observations on the pedestal effect or dipper function**
*Journal of Vision*, 6(13):50, 2006 Fall Vision Meeting of the Optical Society of America, December 2006 (poster)

**A Kernel Method for the Two-Sample-Problem**
20th Annual Conference on Neural Information Processing Systems (NIPS), December 2006 (talk)

**Ab-initio gene finding using machine learning**
NIPS Workshop on New Problems and Methods in Computational Biology, December 2006 (talk)

**Graph boosting for molecular QSAR analysis**
NIPS Workshop on New Problems and Methods in Computational Biology, December 2006 (talk)

**Inferring Causal Directions by Evaluating the Complexity of Conditional Distributions**
NIPS Workshop on Causality and Feature Selection, December 2006 (talk)

**Structure validation of the Josephin domain of ataxin-3: Conclusive evidence for an open conformation**
*Journal of Biomolecular NMR*, 36(4):267-277, December 2006 (article)

**A Unifying View of Wiener and Volterra Theory and Polynomial Kernel Regression**
*Neural Computation*, 18(12):3097-3118, December 2006 (article)

**Minimal Logical Constraint Covering Sets**
(155), Max Planck Institute for Biological Cybernetics, Tübingen, December 2006 (techreport)

**Learning Optimal EEG Features Across Time, Frequency and Space**
NIPS Workshop on Current Trends in Brain-Computer Interfacing, December 2006 (talk)

**Semi-Supervised Learning**
Advanced Methods in Sequence Analysis Lectures, November 2006 (talk)

**Spatial four-alternative forced-choice method is the preferred psychophysical method for naive
observers**
*Journal of Vision*, 6(11):1307-1322, November 2006 (article)

**Prediction of Protein Function from Networks**
In *Semi-Supervised Learning*, pages: 361-376, Adaptive Computation and Machine Learning, (Editors: Chapelle, O. , B. Schölkopf, A. Zien), MIT Press, Cambridge, MA, USA, November 2006 (inbook)

**Adapting Spatial Filter Methods for Nonstationary BCIs**
In *IBIS 2006*, pages: 65-70, 2006 Workshop on Information-Based Induction Sciences, November 2006 (inproceedings)

**Discrete Regularization**
In *Semi-supervised Learning*, pages: 237-250, Adaptive computation and machine learning, (Editors: O Chapelle and B Schölkopf and A Zien), MIT Press, Cambridge, MA, USA, November 2006 (inbook)

**New Methods for the P300 Visual Speller**
(1), (Editors: Hill, J. ), Max-Planck Institute for Biological Cybernetics, Tübingen, Germany, November 2006 (techreport)

**Statistical Analysis of Slow Crack Growth
Experiments**
*Journal of the European Ceramic Society*, 26(15):3061-3065, November 2006 (article)

**Optimizing Spatial Filters for BCI: Margin- and Evidence-Maximization Approaches**
*Challenging Brain-Computer Interfaces: MAIA Workshop 2006*, pages: 1, November 2006 (poster)

**A Machine Learning Approach for Determining the PET Attenuation Map from Magnetic Resonance Images**
IEEE Medical Imaging Conference, November 2006 (talk)

**Mining frequent stem patterns from unaligned RNA sequences**
*Bioinformatics*, 22(20):2480-2487, October 2006 (article)

**Geometric Analysis of Hilbert Schmidt Independence criterion based ICA contrast function**
(PA006080), National ICT Australia, Canberra, Australia, October 2006 (techreport)

**Large-Scale Gene Expression Profiling Reveals Major Pathogenetic Pathways of Cartilage Degeneration in Osteoarthritis**
*Arthritis and Rheumatism*, 54(11):3533-3544, October 2006 (article)

**Semi-Supervised Support Vector Machines and Application to Spam Filtering**
ECML Discovery Challenge Workshop, September 2006 (talk)